Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_pT_M23
         (403 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC8D2.05c |sfi1||spindle pole body protein Sfi1|Schizosaccharo...    25   3.3  
SPBC106.19 ||SPBC582.01|sequence orphan|Schizosaccharomyces pomb...    25   4.4  
SPBP35G2.04c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    25   4.4  
SPCC1322.15 |rpl3402|rpl34, rpl34-2|60S ribosomal protein L34|Sc...    25   5.8  
SPCC4B3.07 |||nuclear pore associated protein|Schizosaccharomyce...    25   5.8  
SPAC23A1.08c |rpl3401|rpl34, rpl34-1|60S ribosomal protein L34|S...    24   7.7  

>SPBC8D2.05c |sfi1||spindle pole body protein
           Sfi1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 840

 Score = 25.4 bits (53), Expect = 3.3
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = +1

Query: 7   WQ*WHDFY*QRELLYLFKKET*LSLSNKSEKSFLKKWQ 120
           W+ W D Y +R  L    +E  L+   K  K +L KW+
Sbjct: 507 WEAWKDNYQRRIKLQKEAQELQLTRIQKIAKQYLIKWR 544


>SPBC106.19 ||SPBC582.01|sequence orphan|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 515

 Score = 25.0 bits (52), Expect = 4.4
 Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
 Frame = -1

Query: 151 YFPDPRLALSVAISSKNSSRIYCS-TIIKFLF*INKVTLFVNKSHAI 14
           Y P  RL + VA+  KNSS I  S  ++K    I    L +   HA+
Sbjct: 358 YLPSHRLLMLVALMMKNSSGILHSYAVLKKANAITNKELRIMMQHAM 404


>SPBP35G2.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 249

 Score = 25.0 bits (52), Expect = 4.4
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -3

Query: 116 HFFKKLFSDLLLNDNQVSFLNK*SNSLC 33
           HF+KKLF+ L L    V+ L+   N  C
Sbjct: 69  HFYKKLFTILWLTVRTVALLSHARNIQC 96


>SPCC1322.15 |rpl3402|rpl34, rpl34-2|60S ribosomal protein
           L34|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 111

 Score = 24.6 bits (51), Expect = 5.8
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = +2

Query: 59  KKKLDYR*AINPRRVF*RNGNTKRQPGIREIPTVDRCYQT 178
           +++L Y    N  R+    GN  R   I+++ T+ RC  T
Sbjct: 8   RRRLAYNTRSNKTRIIKTPGNNIRYLHIKKLGTIPRCGDT 47


>SPCC4B3.07 |||nuclear pore associated protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 393

 Score = 24.6 bits (51), Expect = 5.8
 Identities = 9/27 (33%), Positives = 17/27 (62%)
 Frame = -2

Query: 177 VW*HRSTVGISRIPGWRLVLPFLQKTL 97
           VW H +   ++ IP  +LV P+++K +
Sbjct: 184 VWRHDNEESLANIPVTQLVNPYIEKAI 210


>SPAC23A1.08c |rpl3401|rpl34, rpl34-1|60S ribosomal protein
           L34|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 112

 Score = 24.2 bits (50), Expect = 7.7
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = +2

Query: 59  KKKLDYR*AINPRRVF*RNGNTKRQPGIREIPTVDRCYQT 178
           +++L Y    N  R+    GN  R   I+++ T+ RC  T
Sbjct: 8   RRRLAYNTRSNRTRIIKTPGNNIRYLHIKKLGTIPRCGDT 47


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,448,550
Number of Sequences: 5004
Number of extensions: 27207
Number of successful extensions: 55
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 54
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 55
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 136158338
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)