Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_pT_M23
         (403 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0816 + 27928812-27930059,27931007-27931111,27931197-279312...    29   1.0  
05_03_0004 - 7305986-7306052,7306174-7306490                           29   1.8  
01_06_0403 - 29060712-29060732,29061260-29061334,29061596-290617...    28   3.2  
01_06_1488 + 37716986-37717076,37717424-37717558,37717755-377178...    27   5.6  
10_08_0141 + 15159160-15159306,15159708-15159815,15159958-151600...    27   7.3  
05_07_0208 + 28412736-28415348                                         26   9.7  

>03_05_0816 + 27928812-27930059,27931007-27931111,27931197-27931262,
            27931337-27931501,27931671-27931745,27931829-27931983,
            27932234-27932369,27932454-27932523,27932602-27932729,
            27932838-27932894,27933326-27933511,27934031-27934123,
            27934488-27934573,27934668-27934734,27934873-27934939,
            27935016-27935152,27935618-27935709,27935849-27935915,
            27936058-27936078
          Length = 1006

 Score = 29.5 bits (63), Expect = 1.0
 Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
 Frame = -2

Query: 267  SRYY*ITLHDRPCQLLNALVIDNVVPGVDRV-W*HRSTVGISR-IPGWRLVLP 115
            SR Y +  H     L NA+  DN V  + ++   HR  +  S+ +P W   LP
Sbjct: 905  SRLYNVIKHPNALDLDNAMAYDNAVSALGKICQFHRDGIDASQVVPAWLSCLP 957


>05_03_0004 - 7305986-7306052,7306174-7306490
          Length = 127

 Score = 28.7 bits (61), Expect = 1.8
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = -1

Query: 148 FPDPRLALSVAISSKNSSRIYCSTIIKFLF 59
           F  P L   ++ISS  S +IY S +++FLF
Sbjct: 83  FIHPSLHFKISISSYVSRKIYVSRLLRFLF 112


>01_06_0403 -
           29060712-29060732,29061260-29061334,29061596-29061762,
           29061841-29061996,29062412-29062535,29062949-29063047,
           29063155-29063254,29063331-29063380,29063461-29063562,
           29063709-29063786,29063865-29064131,29064225-29064321,
           29064446-29064746,29066714-29066805,29066890-29067005,
           29067445-29067519,29067846-29067911,29068206-29068262,
           29068381-29068430,29068518-29068688,29068969-29069060,
           29069124-29069281
          Length = 837

 Score = 27.9 bits (59), Expect = 3.2
 Identities = 22/59 (37%), Positives = 31/59 (52%), Gaps = 4/59 (6%)
 Frame = +2

Query: 62  KKLDYR*AINPRRVF*R-NGNTKRQ---PGIREIPTVDRCYQTRSTPGTTLSITKAFNS 226
           KK+ Y   INPR +  +  GNT      P + +IP VD+   T + P T+   + AFNS
Sbjct: 646 KKICY---INPRHLTSKLPGNTSTSGAPPRVEDIPVVDKAVDTCAGPSTS---SMAFNS 698


>01_06_1488 +
           37716986-37717076,37717424-37717558,37717755-37717831,
           37717934-37718181,37718503-37718559,37718665-37718800,
           37718944-37719001,37719110-37719195,37719270-37719326,
           37719537-37719557,37720553-37720954,37721500-37721647,
           37721940-37722036,37724065-37724202,37724496-37724598,
           37724792-37724828,37724905-37725014,37725141-37725164
          Length = 674

 Score = 27.1 bits (57), Expect = 5.6
 Identities = 15/45 (33%), Positives = 21/45 (46%)
 Frame = -1

Query: 253 NNVARSALSTIKCFSN*QRRAGRRSGLVTSVNGRYFPDPRLALSV 119
           N +  S    +K F   +RRAG  S    ++ G    DPR  L+V
Sbjct: 361 NTIEPSTQKALKKFGEKERRAGDESSRTLAMAGEAGGDPRAWLAV 405


>10_08_0141 +
           15159160-15159306,15159708-15159815,15159958-15160006,
           15160067-15160182,15160358-15160399,15161026-15161442,
           15162356-15162509,15162911-15162975,15163793-15163870,
           15163951-15164061,15164227-15164271,15164677-15164850,
           15165383-15166335,15166471-15166681,15167037-15167196,
           15168786-15169174
          Length = 1072

 Score = 26.6 bits (56), Expect = 7.3
 Identities = 17/60 (28%), Positives = 21/60 (35%)
 Frame = -2

Query: 294 AKIACFFFNSRYY*ITLHDRPCQLLNALVIDNVVPGVDRVW*HRSTVGISRIPGWRLVLP 115
           AK  CFF  S       HD P   +N    D  V      W  + +  +   P  RL  P
Sbjct: 816 AKYQCFFVRSDIIFKKAHDEPTSQVNTAADDAFVGRWQNTWKIQPSASMHLCPKERLQAP 875


>05_07_0208 + 28412736-28415348
          Length = 870

 Score = 26.2 bits (55), Expect = 9.7
 Identities = 13/24 (54%), Positives = 18/24 (75%)
 Frame = +2

Query: 182 STPGTTLSITKAFNS*QGRSCNVI 253
           +TPGTT+S+TK  N    +SC+VI
Sbjct: 813 TTPGTTISVTK--NRYTCQSCHVI 834


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,266,347
Number of Sequences: 37544
Number of extensions: 173284
Number of successful extensions: 358
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 354
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 358
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 694697784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)