Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_pT_M23
         (403 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L15188-3|AAA27948.2|  348|Caenorhabditis elegans Hypothetical pr...    30   0.71 
AF068720-2|AAC17787.1|  346|Caenorhabditis elegans Seven tm rece...    28   2.2  
AC024200-9|AAF36012.1|  425|Caenorhabditis elegans Arp2/3 comple...    27   6.7  

>L15188-3|AAA27948.2|  348|Caenorhabditis elegans Hypothetical
           protein C14B9.3 protein.
          Length = 348

 Score = 29.9 bits (64), Expect = 0.71
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = -1

Query: 178 GLVTSVNGRYFPDPRLALSVAISSKNSSRIYCSTIIKF 65
           G+ TS+   Y PD R  +   +    SSR  C+T I F
Sbjct: 77  GIFTSLKSDYIPDERELIRGYVIEYGSSRFRCNTTIPF 114


>AF068720-2|AAC17787.1|  346|Caenorhabditis elegans Seven tm
           receptor protein 240 protein.
          Length = 346

 Score = 28.3 bits (60), Expect = 2.2
 Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 3/45 (6%)
 Frame = -2

Query: 315 LFSNISYAKIACFF---FNSRYY*ITLHDRPCQLLNALVIDNVVP 190
           +F  +SY  +A F     NS+ Y    H    QLLNALV+  ++P
Sbjct: 221 IFGTLSYRAVASFAKNTSNSKQY----HSMQLQLLNALVLQALIP 261


>AC024200-9|AAF36012.1|  425|Caenorhabditis elegans Arp2/3 complex
           component protein 1 protein.
          Length = 425

 Score = 26.6 bits (56), Expect = 6.7
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = +1

Query: 229 TRPIVQRYSIISAIKKKACYFCIADIRK 312
           T P  Q Y +   IK+K CY C  D+ K
Sbjct: 221 TIPAEQSYEVAKMIKEKFCYVC-PDVMK 247


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,044,848
Number of Sequences: 27780
Number of extensions: 158027
Number of successful extensions: 281
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 276
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 281
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 630384202
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)