Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_pT_M23
         (403 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   3.0  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    21   5.3  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    21   5.3  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              21   5.3  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.8 bits (44), Expect = 3.0
 Identities = 9/26 (34%), Positives = 12/26 (46%)
 Frame = -2

Query: 192 PGVDRVW*HRSTVGISRIPGWRLVLP 115
           P  D +W       +  +PG R VLP
Sbjct: 31  PQPDIIWVRADGSAVGDVPGLRQVLP 56


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.0 bits (42), Expect = 5.3
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = +3

Query: 93  REEFFEEMATLSANRGSGKYRPLTDVTR 176
           RE++ +E    +   G  KY  LTD +R
Sbjct: 87  REQWLDERLRFNDFGGRLKYLTLTDASR 114


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.0 bits (42), Expect = 5.3
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = +3

Query: 93  REEFFEEMATLSANRGSGKYRPLTDVTR 176
           RE++ +E    +   G  KY  LTD +R
Sbjct: 87  REQWLDERLRFNDFGGRLKYLTLTDASR 114


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 21.0 bits (42), Expect = 5.3
 Identities = 6/11 (54%), Positives = 10/11 (90%)
 Frame = +1

Query: 172 PDPIDARHDVV 204
           P+PIDA+ D++
Sbjct: 637 PEPIDAQFDII 647


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 95,867
Number of Sequences: 438
Number of extensions: 1953
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10008927
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)