Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_pT_M22
         (572 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1556.05c |||CGR1 family|Schizosaccharomyces pombe|chr 1|||Ma...    30   0.28 
SPAC22A12.14c |||BSD domain protein, unknown biological role|Sch...    29   0.37 
SPBC12C2.02c |ste20|ste16|sterility protein Ste20|Schizosaccharo...    29   0.37 
SPCC364.06 |nap1||nucleosome assembly protein Nap1 |Schizosaccha...    26   4.5  
SPAC186.05c |||human TMEM165 homolog|Schizosaccharomyces pombe|c...    25   7.9  

>SPAC1556.05c |||CGR1 family|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 111

 Score = 29.9 bits (64), Expect = 0.28
 Identities = 18/100 (18%), Positives = 44/100 (44%)
 Frame = -2

Query: 328 RGIPKSGRFWKSKKEKFSTINKTKGLKQDFSKKTALRLELKRTKEISKQAXXXXXXXXXX 149
           +G+  SG+ WK++K+ ++        +  + K+   + +L   KE  K+           
Sbjct: 6   KGVCVSGKPWKTEKKAYNRSGLADAQRTPYEKRMEQKRKLDEIKEREKELKREKEEQRAA 65

Query: 148 XXXXXXQNLKKAEENRKKSEXVQVITNTTKLKRMRKKQLR 29
                    ++A+ +R++ E +Q   +   + R R+++ R
Sbjct: 66  HAEKIRTR-RQAKADRERMELLQAKLHQKVIDRRRRREKR 104


>SPAC22A12.14c |||BSD domain protein, unknown biological
           role|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 347

 Score = 29.5 bits (63), Expect = 0.37
 Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
 Frame = -2

Query: 361 EKRKQEKGKTIRGIP--KSGRFWKSKKEKFST-INKTKGLKQDFSKKTALRLE 212
           EK K+E G  +  +   K G FW S KEK    ++ TKG      ++   +LE
Sbjct: 22  EKLKEEMGSALNNLTNGKFGLFWNSMKEKSENFLDDTKGKASSGMQQLKSQLE 74


>SPBC12C2.02c |ste20|ste16|sterility protein
           Ste20|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1309

 Score = 29.5 bits (63), Expect = 0.37
 Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
 Frame = -2

Query: 421 TKSRDKYKEVTIAN--NAPVLSEKRKQEKGKTIRGIPKSGRFWKSKKEKFSTINKTK 257
           TK+  K++  T+      P+LS KR  E  +T + + +   F+K    +FS+I  TK
Sbjct: 713 TKNYQKWRWDTLVQIMEGPLLSPKRIDETLRTTKFMRRLLAFYKPFSNRFSSIQNTK 769


>SPCC364.06 |nap1||nucleosome assembly protein Nap1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 393

 Score = 25.8 bits (54), Expect = 4.5
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = -2

Query: 373 PVLSEKRKQEKGKTIRGIPKSGRFW 299
           P  SE +KQE G   +GIP+   FW
Sbjct: 147 PTSSESKKQEGGDDTKGIPE---FW 168


>SPAC186.05c |||human TMEM165 homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 262

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
 Frame = -2

Query: 352 KQEKGKTIR-GIPKSGRFWKSKKEKFSTINKTKGLKQDFSKK 230
           +++  KT+  G+P S R   + K+KF  +      K  FSKK
Sbjct: 133 EEDMKKTLELGLPASNRSSSTLKDKFFKVFSMSCFKNLFSKK 174


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,714,301
Number of Sequences: 5004
Number of extensions: 30028
Number of successful extensions: 99
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 98
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 99
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 244081442
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)