Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P17_pT_M22
(572 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_03_0049 + 14421408-14421942,14421988-14422842,14423847-144241... 29 2.0
02_05_0699 + 31013176-31013345,31013749-31013872,31013950-310140... 29 2.6
05_07_0329 - 29308867-29308932,29309040-29309159,29309245-293093... 29 3.5
12_02_0143 - 14354323-14354463,14354733-14354837,14355515-143558... 28 4.6
05_06_0085 + 25441460-25443504,25444263-25444536,25445091-25445468 28 4.6
12_01_0824 + 7601811-7602598,7603690-7605730,7605762-7605767,760... 28 6.1
09_02_0003 + 2892186-2892628,2893409-2894282 28 6.1
01_06_0590 + 30453407-30455442,30456313-30456586,30456992-30457318 28 6.1
01_04_0148 + 16818631-16819173,16819264-16819464 28 6.1
12_01_0199 - 1467137-1467172,1467302-1467391,1468304-1468396,146... 27 8.0
02_01_0065 - 477465-477512,477593-477685,477777-478316,478667-47... 27 8.0
>02_03_0049 +
14421408-14421942,14421988-14422842,14423847-14424151,
14424469-14424984
Length = 736
Score = 29.5 bits (63), Expect = 2.0
Identities = 15/46 (32%), Positives = 24/46 (52%)
Frame = -2
Query: 427 DITKSRDKYKEVTIANNAPVLSEKRKQEKGKTIRGIPKSGRFWKSK 290
+ T R++Y + +PVL++K +Q K PKS + WK K
Sbjct: 409 ETTMPRNRYWRTPV--KSPVLAKKLEQPAQKRPSSAPKSKKVWKEK 452
>02_05_0699 +
31013176-31013345,31013749-31013872,31013950-31014032,
31014106-31014217,31014297-31014401,31014809-31014859,
31015893-31015979,31016325-31016402,31016477-31016530,
31016608-31016892
Length = 382
Score = 29.1 bits (62), Expect = 2.6
Identities = 22/87 (25%), Positives = 33/87 (37%)
Frame = -2
Query: 502 TNYTKILTKIVMADETQAKVSSIVTDITKSRDKYKEVTIANNAPVLSEKRKQEKGKTIRG 323
+ Y ++L K A+ + ++ K R+ + NN L KGKT
Sbjct: 266 SEYREVLAKFTEMTSRYAQEMQTIDELLKERNAI-HASYTNNT-TLQRSSSSNKGKTSSK 323
Query: 322 IPKSGRFWKSKKEKFSTINKTKGLKQD 242
KS KKEK S +G + D
Sbjct: 324 ESKSDDDQTVKKEKKSKSKSMEGSRSD 350
>05_07_0329 -
29308867-29308932,29309040-29309159,29309245-29309364,
29309566-29310123,29310199-29310258,29310839-29310904,
29310993-29311103,29311167-29311257,29311349-29311449,
29311534-29311641,29311737-29314205
Length = 1289
Score = 28.7 bits (61), Expect = 3.5
Identities = 30/116 (25%), Positives = 46/116 (39%), Gaps = 1/116 (0%)
Frame = -2
Query: 379 NAPVLSEKRKQEKGKTIRGIPKSGRFWKSKKEKFSTINKTKGLKQDFSKKTALRLELKRT 200
+A +K+K+EK K + K +KKE+ + KG K D K E++
Sbjct: 376 SAAAKKKKKKKEKEKEKKAAAKEA---DAKKEEEKAVEAPKG-KVDMKKLPKHVREMQEA 431
Query: 199 KEISKQAXXXXXXXXXXXXXXXXQN-LKKAEENRKKSEXVQVITNTTKLKRMRKKQ 35
++A + LKK EE RK E + K K ++KKQ
Sbjct: 432 LARRQEAEERKKREEEERLRKEEEERLKKEEEERKAEEAKRRKKEREKEKLLKKKQ 487
>12_02_0143 -
14354323-14354463,14354733-14354837,14355515-14355815,
14356065-14356261,14356412-14356940,14357842-14358848
Length = 759
Score = 28.3 bits (60), Expect = 4.6
Identities = 14/60 (23%), Positives = 28/60 (46%)
Frame = -2
Query: 427 DITKSRDKYKEVTIANNAPVLSEKRKQEKGKTIRGIPKSGRFWKSKKEKFSTINKTKGLK 248
+ T R++Y+ + + P ++K +Q + +PK + WK K + +I G K
Sbjct: 447 ETTMPRNRYRRTLVKASTP--AKKLEQPAQRKPSSVPKPKKVWKEKTKDAHSITSGDGWK 504
>05_06_0085 + 25441460-25443504,25444263-25444536,25445091-25445468
Length = 898
Score = 28.3 bits (60), Expect = 4.6
Identities = 12/44 (27%), Positives = 25/44 (56%)
Frame = -2
Query: 484 LTKIVMADETQAKVSSIVTDITKSRDKYKEVTIANNAPVLSEKR 353
L+++ D+ A SS+ +D+ S + + +AN PV++ +R
Sbjct: 45 LSELDDEDDEPAATSSVASDVPSSAACERLIVVANQLPVVARRR 88
>12_01_0824 +
7601811-7602598,7603690-7605730,7605762-7605767,
7606142-7606291
Length = 994
Score = 27.9 bits (59), Expect = 6.1
Identities = 13/18 (72%), Positives = 15/18 (83%)
Frame = -2
Query: 484 LTKIVMADETQAKVSSIV 431
LTK+VM +ETQ KV SIV
Sbjct: 174 LTKLVMDEETQLKVMSIV 191
>09_02_0003 + 2892186-2892628,2893409-2894282
Length = 438
Score = 27.9 bits (59), Expect = 6.1
Identities = 15/46 (32%), Positives = 23/46 (50%)
Frame = -2
Query: 427 DITKSRDKYKEVTIANNAPVLSEKRKQEKGKTIRGIPKSGRFWKSK 290
+ T R++Y + APV ++K +Q K PKS + WK K
Sbjct: 378 ETTMLRNRYWRTPV--KAPVPAKKSEQPAQKKPSSAPKSKKVWKEK 421
>01_06_0590 + 30453407-30455442,30456313-30456586,30456992-30457318
Length = 878
Score = 27.9 bits (59), Expect = 6.1
Identities = 11/44 (25%), Positives = 23/44 (52%)
Frame = -2
Query: 469 MADETQAKVSSIVTDITKSRDKYKEVTIANNAPVLSEKRKQEKG 338
+A+ + + S+ +D+ S + + +AN PV E+R +G
Sbjct: 55 LAELDEERAGSVTSDVPSSLASDRLIVVANTLPVRCERRPDGRG 98
>01_04_0148 + 16818631-16819173,16819264-16819464
Length = 247
Score = 27.9 bits (59), Expect = 6.1
Identities = 15/55 (27%), Positives = 27/55 (49%)
Frame = -2
Query: 454 QAKVSSIVTDITKSRDKYKEVTIANNAPVLSEKRKQEKGKTIRGIPKSGRFWKSK 290
Q ++ + + T R++Y + + +PV ++K Q K PKS + WK K
Sbjct: 178 QCSMNFLEKETTMPRNRYWKTPV--KSPVPAKKSDQPAQKKPPSAPKSKKVWKEK 230
>12_01_0199 - 1467137-1467172,1467302-1467391,1468304-1468396,
1468488-1469515,1470005-1470552,1470656-1470695,
1473774-1475196
Length = 1085
Score = 27.5 bits (58), Expect = 8.0
Identities = 12/28 (42%), Positives = 19/28 (67%)
Frame = -3
Query: 330 SEVSQNLAGSGSLKKKNSRPLIKQKVSN 247
S+++QNLA LKKK SR + ++ +N
Sbjct: 974 SQLAQNLAHVSGLKKKESRKRVTKRKTN 1001
>02_01_0065 -
477465-477512,477593-477685,477777-478316,478667-478670,
479494-480063,480167-480204
Length = 430
Score = 27.5 bits (58), Expect = 8.0
Identities = 12/28 (42%), Positives = 19/28 (67%)
Frame = -3
Query: 330 SEVSQNLAGSGSLKKKNSRPLIKQKVSN 247
S+++QNLA LKKK SR + ++ +N
Sbjct: 345 SQLAQNLAHVSGLKKKESRKRVTKRKTN 372
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,159,493
Number of Sequences: 37544
Number of extensions: 174591
Number of successful extensions: 570
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 559
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 570
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1328870592
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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