Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_pT_M22
         (572 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholi...    25   0.40 
EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholi...    25   0.40 
EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholi...    25   0.40 
EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholi...    25   0.70 
EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholi...    25   0.70 
EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholi...    25   0.70 
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    22   5.0  
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    21   6.6  
AY739659-1|AAU85298.1|  288|Apis mellifera hyperpolarization-act...    21   8.7  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    21   8.7  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    21   8.7  

>EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 6 protein.
          Length = 461

 Score = 25.4 bits (53), Expect = 0.40
 Identities = 16/61 (26%), Positives = 29/61 (47%), Gaps = 2/61 (3%)
 Frame = +3

Query: 237 EKSCLRPFVLLMVENFSFLDFQNLPDFG--IPLIVFPFSCFLFSLRTGALFAIVTSLYLS 410
           EK  L   +LL +  F  L  + LP     IPL+   F+C +F + +  +  ++  ++  
Sbjct: 224 EKLTLGVTILLSLTVFLNLVAETLPQVSDAIPLLGSYFNCIMFMVASSVVLTVLVLIFHH 283

Query: 411 R 413
           R
Sbjct: 284 R 284


>EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 5 protein.
          Length = 461

 Score = 25.4 bits (53), Expect = 0.40
 Identities = 16/61 (26%), Positives = 29/61 (47%), Gaps = 2/61 (3%)
 Frame = +3

Query: 237 EKSCLRPFVLLMVENFSFLDFQNLPDFG--IPLIVFPFSCFLFSLRTGALFAIVTSLYLS 410
           EK  L   +LL +  F  L  + LP     IPL+   F+C +F + +  +  ++  ++  
Sbjct: 224 EKLTLGVTILLSLTVFLNLVAETLPQVSDAIPLLGSYFNCIMFMVASSVVLTVLVLIFHH 283

Query: 411 R 413
           R
Sbjct: 284 R 284


>EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 4 protein.
          Length = 461

 Score = 25.4 bits (53), Expect = 0.40
 Identities = 16/61 (26%), Positives = 29/61 (47%), Gaps = 2/61 (3%)
 Frame = +3

Query: 237 EKSCLRPFVLLMVENFSFLDFQNLPDFG--IPLIVFPFSCFLFSLRTGALFAIVTSLYLS 410
           EK  L   +LL +  F  L  + LP     IPL+   F+C +F + +  +  ++  ++  
Sbjct: 224 EKLTLGVTILLSLTVFLNLVAETLPQVSDAIPLLGSYFNCIMFMVASSVVLTVLVLIFHH 283

Query: 411 R 413
           R
Sbjct: 284 R 284


>EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 3 protein.
          Length = 461

 Score = 24.6 bits (51), Expect = 0.70
 Identities = 15/61 (24%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
 Frame = +3

Query: 237 EKSCLRPFVLLMVENFSFLDFQNLPDFG--IPLIVFPFSCFLFSLRTGALFAIVTSLYLS 410
           EK  L   +LL +  F  L  +++P     +PLI   F+C +F + +  +  ++  ++  
Sbjct: 224 EKLTLGVTILLSLTVFLNLVAESMPTTSDAVPLIGSYFNCIMFMVASSVVLTVLVLIFHH 283

Query: 411 R 413
           R
Sbjct: 284 R 284


>EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 2 protein.
          Length = 461

 Score = 24.6 bits (51), Expect = 0.70
 Identities = 15/61 (24%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
 Frame = +3

Query: 237 EKSCLRPFVLLMVENFSFLDFQNLPDFG--IPLIVFPFSCFLFSLRTGALFAIVTSLYLS 410
           EK  L   +LL +  F  L  +++P     +PLI   F+C +F + +  +  ++  ++  
Sbjct: 224 EKLTLGVTILLSLTVFLNLVAESMPTTSDAVPLIGSYFNCIMFMVASSVVLTVLVLIFHH 283

Query: 411 R 413
           R
Sbjct: 284 R 284


>EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 1 protein.
          Length = 461

 Score = 24.6 bits (51), Expect = 0.70
 Identities = 15/61 (24%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
 Frame = +3

Query: 237 EKSCLRPFVLLMVENFSFLDFQNLPDFG--IPLIVFPFSCFLFSLRTGALFAIVTSLYLS 410
           EK  L   +LL +  F  L  +++P     +PLI   F+C +F + +  +  ++  ++  
Sbjct: 224 EKLTLGVTILLSLTVFLNLVAESMPTTSDAVPLIGSYFNCIMFMVASSVVLTVLVLIFHH 283

Query: 411 R 413
           R
Sbjct: 284 R 284


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = -2

Query: 445 VSSIVTDITKSRDKYKEVTIANNAPVLSEKRKQEKGK 335
           V +++  I K+ DKY+E TI    P+L    K   GK
Sbjct: 78  VLNVLYFINKN-DKYEENTILTTMPLLINVVKYLGGK 113


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 21.4 bits (43), Expect = 6.6
 Identities = 8/26 (30%), Positives = 15/26 (57%)
 Frame = -2

Query: 307 RFWKSKKEKFSTINKTKGLKQDFSKK 230
           ++WK ++  FS   +   L  DF++K
Sbjct: 90  QYWKDERLAFSQEEEVLTLSGDFAEK 115


>AY739659-1|AAU85298.1|  288|Apis mellifera
           hyperpolarization-activated ion channelvariant T
           protein.
          Length = 288

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 14/45 (31%), Positives = 19/45 (42%)
 Frame = +3

Query: 279 NFSFLDFQNLPDFGIPLIVFPFSCFLFSLRTGALFAIVTSLYLSR 413
           ++ FL F    DF     +      L  LR   L ++V  L LSR
Sbjct: 180 DYIFLIFNQFQDFSESFQILHAGRALRILRLAKLLSLVRLLRLSR 224


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 14/45 (31%), Positives = 19/45 (42%)
 Frame = +3

Query: 279 NFSFLDFQNLPDFGIPLIVFPFSCFLFSLRTGALFAIVTSLYLSR 413
           ++ FL F    DF     +      L  LR   L ++V  L LSR
Sbjct: 180 DYIFLIFNQFQDFSESFQILHAGRALRILRLAKLLSLVRLLRLSR 224


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 14/45 (31%), Positives = 19/45 (42%)
 Frame = +3

Query: 279 NFSFLDFQNLPDFGIPLIVFPFSCFLFSLRTGALFAIVTSLYLSR 413
           ++ FL F    DF     +      L  LR   L ++V  L LSR
Sbjct: 180 DYIFLIFNQFQDFSESFQILHAGRALRILRLAKLLSLVRLLRLSR 224


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 115,246
Number of Sequences: 438
Number of extensions: 2178
Number of successful extensions: 11
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16504155
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)