Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_pT_M20
         (565 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC31A2.11c |cuf1||Cu metalloregulatory transcription factor Cu...    26   4.4  
SPAC29B12.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    25   5.8  
SPAC17A2.06c |vps8||WD repeat protein Vps8|Schizosaccharomyces p...    25   7.7  

>SPAC31A2.11c |cuf1||Cu metalloregulatory transcription factor Cuf1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 411

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 15/39 (38%), Positives = 20/39 (51%)
 Frame = -3

Query: 437 YNDCEHTKTGGANEDNRYNDDAVILDELSARAGLWTSSS 321
           + D  HT     N  N Y    +  DEL+A + L+TSSS
Sbjct: 365 HTDLHHTFKHEVNSSNNYE---LTNDELAASSPLYTSSS 400


>SPAC29B12.08 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 682

 Score = 25.4 bits (53), Expect = 5.8
 Identities = 18/67 (26%), Positives = 27/67 (40%), Gaps = 1/67 (1%)
 Frame = -2

Query: 297 TPRVAAGRHQDPNNSQEHRTPGDQPKQPVYLVAAVPLDVSGAQRQRHRLQPGG-NPADPH 121
           TP   +     P N Q    P    +QP+Y  A+VP  +S      + L      P   H
Sbjct: 323 TPNQPSYLESKPGNHQ----PSYTSEQPMYSTASVPQQISNGPTAVNGLPMNSYTPHSNH 378

Query: 120 VRALAPN 100
           + + +PN
Sbjct: 379 LHSPSPN 385


>SPAC17A2.06c |vps8||WD repeat protein Vps8|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1272

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = +2

Query: 323 SCWSTSRHVLITHPKLQHHRYSDYL 397
           SCW    + +I H   +  RY DY+
Sbjct: 865 SCWDHQLYQVILHISFKCGRYEDYI 889


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,427,349
Number of Sequences: 5004
Number of extensions: 48035
Number of successful extensions: 140
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 238029836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)