Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P17_pT_M20
(565 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0607 + 4464669-4465367,4466212-4467369,4468005-4469114,446... 38 0.006
02_02_0327 - 8983983-8985878 31 0.63
07_03_0921 + 22606287-22606490,22607139-22607210,22607433-226075... 30 1.1
04_04_1133 - 31132835-31132942,31133046-31133115,31133201-311333... 30 1.1
07_03_1095 + 23926977-23927657 29 3.4
03_02_0383 + 7966929-7968951,7969085-7969104 29 3.4
10_08_0584 + 18971761-18971834,18971852-18973133,18973197-189745... 28 4.5
09_06_0375 - 22653366-22657112,22657185-22658457,22658833-22659539 28 4.5
07_03_0508 - 18892193-18893119,18893183-18894528,18894594-18895206 28 4.5
06_03_0267 + 18970578-18972464 28 4.5
06_02_0121 + 12080417-12081632,12082428-12082780,12082844-12083776 28 4.5
05_03_0294 + 11818391-11820268,11820332-11820550,11820752-118216... 28 4.5
04_04_1405 - 33305948-33309676,33309749-33310468,33310533-333114... 28 4.5
04_04_1081 - 30700791-30700904,30701011-30703053,30703126-30704376 28 4.5
04_04_0645 + 26913947-26915783,26915833-26916308,26916372-26917220 28 4.5
02_03_0347 - 17999780-18000592,18000656-18003019 28 4.5
02_03_0116 - 15440263-15441024,15441097-15443451 28 4.5
01_06_0717 - 31446860-31447074,31447183-31447270,31448909-314490... 28 4.5
11_01_0711 - 5839385-5840311,5840815-5841111 28 5.9
04_04_0210 + 23616407-23618851 28 5.9
03_01_0658 + 4818401-4818540,4818605-4819201,4819694-4819949,482... 28 5.9
01_01_0629 - 4738519-4738607,4738700-4738828,4738921-4739011,473... 28 5.9
10_08_0944 + 21735483-21735848,21737025-21737276 27 7.8
>03_01_0607 + 4464669-4465367,4466212-4467369,4468005-4469114,
4469273-4469314,4469496-4469572,4469671-4469755,
4469818-4469901,4469988-4470089,4470181-4470279,
4470794-4470919
Length = 1193
Score = 37.9 bits (84), Expect = 0.006
Identities = 35/116 (30%), Positives = 52/116 (44%), Gaps = 10/116 (8%)
Frame = -3
Query: 329 SSSGFMFYSVPHRGSPLADI--KTPITARSIELL-EISQNSRSTLSLQSRWMSAVRSGSA 159
+++G +FYS PH GS LAD+ + + R + E+ S + L G
Sbjct: 1053 NTNGLVFYSCPHFGSRLADMPWRMGLVFRPAPSIGELRSGSPRLVELNDFVRQRHSKGLL 1112
Query: 158 TVCSLVETRRTLMS------VLWLRIVSLQSADAGVGS-VEGAGVDHRQVCKPSSR 12
V S ET+ T + L + IV ++SA G G V A DH CKP ++
Sbjct: 1113 NVLSFSETQVTPIVEGYGGWALRMEIVPIESAYPGYGELVVLASTDHINSCKPVNK 1168
>02_02_0327 - 8983983-8985878
Length = 631
Score = 31.1 bits (67), Expect = 0.63
Identities = 20/55 (36%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
Frame = -1
Query: 337 CGPAALGSC-FIRCHTEGRRWPTSRPQ*QPGASNSWRSAKTAGLPCRCSPAGCQR 176
CG A GS F + H G+R + P + GA S K G RCS GC +
Sbjct: 374 CGKGAQGSTNFCKAHGGGKR--CTHPDCKKGAEGSTAFCKGHGGGKRCSAEGCTK 426
>07_03_0921 +
22606287-22606490,22607139-22607210,22607433-22607522,
22607694-22607736,22608151-22608257,22608848-22608943,
22609543-22609733,22609819-22609888,22609992-22610099
Length = 326
Score = 30.3 bits (65), Expect = 1.1
Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 2/68 (2%)
Frame = -3
Query: 236 LEISQNSRSTLSLQSRWMSAVRSGSATVCSLVE--TRRTLMSVLWLRIVSLQSADAGVGS 63
L +S NSR+ +LQ+ ++ G+ C + TRR WL+ + L AG+G+
Sbjct: 261 LRLSDNSRACAALQTCLPDMLKDGTFNNCLRDDPTTRR------WLQQLLLNVTGAGMGA 314
Query: 62 VEGAGVDH 39
G+DH
Sbjct: 315 APQPGLDH 322
>04_04_1133 -
31132835-31132942,31133046-31133115,31133201-31133391,
31133991-31134086,31134676-31134782,31135197-31135239,
31135411-31135500,31135723-31135794,31136443-31136646
Length = 326
Score = 30.3 bits (65), Expect = 1.1
Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 2/68 (2%)
Frame = -3
Query: 236 LEISQNSRSTLSLQSRWMSAVRSGSATVCSLVE--TRRTLMSVLWLRIVSLQSADAGVGS 63
L +S NSR+ +LQ+ ++ G+ C + TRR WL+ + L AG+G+
Sbjct: 261 LRLSDNSRACAALQTCLPDMLKDGTFNNCLRDDPTTRR------WLQQLLLNVTGAGMGA 314
Query: 62 VEGAGVDH 39
G+DH
Sbjct: 315 APQPGLDH 322
>07_03_1095 + 23926977-23927657
Length = 226
Score = 28.7 bits (61), Expect = 3.4
Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Frame = -3
Query: 170 SGSATVCSLVETRRTLMSVLWLRI-VSLQSADA-GVGSVEGAGVDHRQVCKPSSR 12
SGS + S E S+L L + ++ D G+G V+G GVD ++ KPS R
Sbjct: 41 SGSVAIGSDSEEEYLATSLLMLAHGIRDETKDIRGMGDVKGVGVDTLELVKPSQR 95
>03_02_0383 + 7966929-7968951,7969085-7969104
Length = 680
Score = 28.7 bits (61), Expect = 3.4
Identities = 23/63 (36%), Positives = 30/63 (47%), Gaps = 4/63 (6%)
Frame = -3
Query: 182 SAVRSGSATVCSLVETRRTLMSVLWLRIVSLQSADAGVGSVE----GAGVDHRQVCKPSS 15
SAV +G A V +LV L +WLR + A AG G+ G GV R P+
Sbjct: 39 SAVGAGVAAVVALVLVALGLGLFVWLRRGRKRGAGAGGGAAARMGVGVGVGARTQPAPAL 98
Query: 14 RRV 6
RR+
Sbjct: 99 RRL 101
>10_08_0584 +
18971761-18971834,18971852-18973133,18973197-18974509,
18993885-18993935,18994674-18994829,18995048-18995123,
18995317-18995364,18995445-18995489,18995580-18995679,
18995923-18995968,18996115-18996176,18996257-18996355,
18996536-18996609,18996721-18996790,18997074-18997162,
18997327-18997404
Length = 1220
Score = 28.3 bits (60), Expect = 4.5
Identities = 17/40 (42%), Positives = 20/40 (50%), Gaps = 4/40 (10%)
Frame = -2
Query: 192 PLDVSGAQRQ--RHRL--QPGGNPADPHVRALAPNRQLTI 85
P D+ G R+ HRL +PG P VR AP RQ I
Sbjct: 471 PADMPGVPREVIEHRLAVRPGARPVRQKVRRQAPERQAFI 510
>09_06_0375 - 22653366-22657112,22657185-22658457,22658833-22659539
Length = 1908
Score = 28.3 bits (60), Expect = 4.5
Identities = 17/40 (42%), Positives = 20/40 (50%), Gaps = 4/40 (10%)
Frame = -2
Query: 192 PLDVSGAQRQ--RHRL--QPGGNPADPHVRALAPNRQLTI 85
P D+ G R+ HRL +PG P VR AP RQ I
Sbjct: 679 PADMPGVPREVIEHRLAVRPGARPVRQKVRRQAPGRQAFI 718
>07_03_0508 - 18892193-18893119,18893183-18894528,18894594-18895206
Length = 961
Score = 28.3 bits (60), Expect = 4.5
Identities = 17/40 (42%), Positives = 20/40 (50%), Gaps = 4/40 (10%)
Frame = -2
Query: 192 PLDVSGAQRQ--RHRL--QPGGNPADPHVRALAPNRQLTI 85
P D+ G R+ HRL +PG P VR AP RQ I
Sbjct: 672 PADMPGVPREVIEHRLAVRPGARPVRQKVRRQAPERQAFI 711
>06_03_0267 + 18970578-18972464
Length = 628
Score = 28.3 bits (60), Expect = 4.5
Identities = 19/55 (34%), Positives = 23/55 (41%), Gaps = 1/55 (1%)
Frame = -1
Query: 337 CGPAALGSC-FIRCHTEGRRWPTSRPQ*QPGASNSWRSAKTAGLPCRCSPAGCQR 176
C A GS F + H G+R + P GA S K G RCS GC +
Sbjct: 379 CTKGAQGSTNFCKAHGGGKR--CTHPNCSKGAEGSTALCKAHGGGKRCSAEGCPK 431
>06_02_0121 + 12080417-12081632,12082428-12082780,12082844-12083776
Length = 833
Score = 28.3 bits (60), Expect = 4.5
Identities = 17/40 (42%), Positives = 20/40 (50%), Gaps = 4/40 (10%)
Frame = -2
Query: 192 PLDVSGAQRQ--RHRL--QPGGNPADPHVRALAPNRQLTI 85
P D+ G R+ HRL +PG P VR AP RQ I
Sbjct: 542 PADMPGVPREVIEHRLAVRPGARPVRQKVRRQAPERQAFI 581
>05_03_0294 +
11818391-11820268,11820332-11820550,11820752-11821644,
11829889-11829905,11829927-11830183
Length = 1087
Score = 28.3 bits (60), Expect = 4.5
Identities = 17/40 (42%), Positives = 20/40 (50%), Gaps = 4/40 (10%)
Frame = -2
Query: 192 PLDVSGAQRQ--RHRL--QPGGNPADPHVRALAPNRQLTI 85
P D+ G R+ HRL +PG P VR AP RQ I
Sbjct: 645 PADMPGVPREVIEHRLAVRPGARPVRQKVRRQAPERQAFI 684
>04_04_1405 -
33305948-33309676,33309749-33310468,33310533-33311439,
33334405-33334484
Length = 1811
Score = 28.3 bits (60), Expect = 4.5
Identities = 17/40 (42%), Positives = 20/40 (50%), Gaps = 4/40 (10%)
Frame = -2
Query: 192 PLDVSGAQRQ--RHRL--QPGGNPADPHVRALAPNRQLTI 85
P D+ G R+ HRL +PG P VR AP RQ I
Sbjct: 588 PADMPGVPREVIEHRLAVRPGARPVRQKVRRQAPERQAFI 627
>04_04_1081 - 30700791-30700904,30701011-30703053,30703126-30704376
Length = 1135
Score = 28.3 bits (60), Expect = 4.5
Identities = 17/40 (42%), Positives = 20/40 (50%), Gaps = 4/40 (10%)
Frame = -2
Query: 192 PLDVSGAQRQ--RHRL--QPGGNPADPHVRALAPNRQLTI 85
P D+ G R+ HRL +PG P VR AP RQ I
Sbjct: 436 PADMPGVPREVIEHRLAVRPGARPVRQKVRRQAPERQAFI 475
>04_04_0645 + 26913947-26915783,26915833-26916308,26916372-26917220
Length = 1053
Score = 28.3 bits (60), Expect = 4.5
Identities = 17/40 (42%), Positives = 21/40 (52%), Gaps = 4/40 (10%)
Frame = -2
Query: 192 PLDVSGAQRQ--RHRL--QPGGNPADPHVRALAPNRQLTI 85
P D++G R+ HRL +PG P VR AP RQ I
Sbjct: 790 PADMTGVPREVIEHRLAVRPGARPVRQKVRWQAPERQAFI 829
>02_03_0347 - 17999780-18000592,18000656-18003019
Length = 1058
Score = 28.3 bits (60), Expect = 4.5
Identities = 17/40 (42%), Positives = 20/40 (50%), Gaps = 4/40 (10%)
Frame = -2
Query: 192 PLDVSGAQRQ--RHRL--QPGGNPADPHVRALAPNRQLTI 85
P D+ G R+ HRL +PG P VR AP RQ I
Sbjct: 807 PADMPGVPREVIEHRLAVRPGARPVRQKVRRQAPERQAFI 846
>02_03_0116 - 15440263-15441024,15441097-15443451
Length = 1038
Score = 28.3 bits (60), Expect = 4.5
Identities = 17/40 (42%), Positives = 20/40 (50%), Gaps = 4/40 (10%)
Frame = -2
Query: 192 PLDVSGAQRQ--RHRL--QPGGNPADPHVRALAPNRQLTI 85
P D+ G R+ HRL +PG P VR AP RQ I
Sbjct: 804 PADMPGVPREVIEHRLAVRPGARPVRQKVRRQAPERQAFI 843
>01_06_0717 -
31446860-31447074,31447183-31447270,31448909-31449012,
31449618-31449745,31450461-31450555,31461823-31463115,
31463188-31464039,31464568-31464621
Length = 942
Score = 28.3 bits (60), Expect = 4.5
Identities = 17/40 (42%), Positives = 20/40 (50%), Gaps = 4/40 (10%)
Frame = -2
Query: 192 PLDVSGAQRQ--RHRL--QPGGNPADPHVRALAPNRQLTI 85
P D+ G R+ HRL +PG P VR AP RQ I
Sbjct: 321 PADMPGVPREVIEHRLAVRPGARPVRQKVRRQAPERQAFI 360
>11_01_0711 - 5839385-5840311,5840815-5841111
Length = 407
Score = 27.9 bits (59), Expect = 5.9
Identities = 10/35 (28%), Positives = 21/35 (60%)
Frame = -1
Query: 547 VFNTTHYREFK*IWERAARCVARNRIPNGIFSKTA 443
VFN +++R++ +W ++ N+I N I S+ +
Sbjct: 207 VFNASNFRDYSKVWIYVSQTFDLNKISNSIISQVS 241
>04_04_0210 + 23616407-23618851
Length = 814
Score = 27.9 bits (59), Expect = 5.9
Identities = 19/50 (38%), Positives = 27/50 (54%), Gaps = 3/50 (6%)
Frame = -3
Query: 182 SAVRSGSATVCSLVETRRTLMSV--LW-LRIVSLQSADAGVGSVEGAGVD 42
++VR G V ++ TR + LW LRI L++ D G+V GAG D
Sbjct: 200 ASVRGGGDGVAAVQSTRSKVYVTPKLWYLRISVLEAQDVVPGAVAGAGGD 249
>03_01_0658 +
4818401-4818540,4818605-4819201,4819694-4819949,
4820038-4820723,4821009-4821147,4821378-4821514,
4821805-4822077,4822175-4822382,4822660-4822731,
4823230-4823460,4824269-4824532,4825127-4825268,
4825355-4825467
Length = 1085
Score = 27.9 bits (59), Expect = 5.9
Identities = 14/38 (36%), Positives = 18/38 (47%), Gaps = 3/38 (7%)
Frame = +3
Query: 243 DAPGCYWGLDV---GQRRPSVWHRIKHEPRAAGPQAGT 347
D+P C+ GL G R+ +W R RA GP T
Sbjct: 80 DSPNCFCGLIPAANGVRKSGLWQRTNEIIRALGPNPST 117
>01_01_0629 -
4738519-4738607,4738700-4738828,4738921-4739011,
4739103-4739177,4739529-4739618,4739742-4739840,
4739934-4739987,4740084-4740131,4740232-4740330,
4740458-4740541,4740650-4740721,4740812-4740907,
4741012-4741077,4741148-4741253,4741350-4741501,
4741634-4741708,4741792-4741912,4742968-4743209,
4743328-4743381
Length = 613
Score = 27.9 bits (59), Expect = 5.9
Identities = 15/52 (28%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Frame = +1
Query: 112 STDMRVRRVSTRLQTVALPLRTADIQRDCSDKVDRLFW--LISRSSMLLAVI 261
S D++V+++ L+ ++PL+ D ++ +RLF+ LI LL V+
Sbjct: 135 SQDLQVKKIMHNLRQYSVPLQRYMAMMDLQERNERLFYKLLIDNVEELLPVV 186
>10_08_0944 + 21735483-21735848,21737025-21737276
Length = 205
Score = 27.5 bits (58), Expect = 7.8
Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Frame = +3
Query: 204 QGRPAVLADLQEFDAPGCYWGLDVG-QRRPSV 296
+ RPA + +F A GC+WG+++ QR P V
Sbjct: 31 EDRPAAGNEFAQFGA-GCFWGVELAFQRVPGV 61
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,939,346
Number of Sequences: 37544
Number of extensions: 410608
Number of successful extensions: 1346
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 1313
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1346
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1293275844
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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