Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_pT_M20
         (565 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z69794-5|CAA93682.1|  506|Caenorhabditis elegans Hypothetical pr...    36   0.015
Z69789-6|CAA93652.1|  506|Caenorhabditis elegans Hypothetical pr...    36   0.015
Z79639-1|CAB01916.1| 2948|Caenorhabditis elegans Hypothetical pr...    29   1.7  
AL032657-4|CAD27614.1| 1070|Caenorhabditis elegans Hypothetical ...    28   4.0  
L14745-4|AAA27921.1|  419|Caenorhabditis elegans Hypothetical pr...    28   5.3  
L14745-3|AAM15539.1|  450|Caenorhabditis elegans Hypothetical pr...    28   5.3  
AF039037-5|AAC48228.3|  714|Caenorhabditis elegans Temporarily a...    28   5.3  
Z92784-1|CAB07192.1|  204|Caenorhabditis elegans Hypothetical pr...    27   7.0  
U31948-1|AAC47126.1|  204|Caenorhabditis elegans cyclophilin iso...    27   7.0  
Z95559-9|CAI46625.1|  510|Caenorhabditis elegans Hypothetical pr...    27   9.3  

>Z69794-5|CAA93682.1|  506|Caenorhabditis elegans Hypothetical
           protein F17H10.1 protein.
          Length = 506

 Score = 36.3 bits (80), Expect = 0.015
 Identities = 27/108 (25%), Positives = 53/108 (49%), Gaps = 1/108 (0%)
 Frame = -3

Query: 338 LWTSSSGFMFYSVPHRGSPLADIKTPITARSIELLEISQNSRSTLSLQSRWMSAVRSGSA 159
           L  ++ G +F + PH+GSP+A+    +   + ++  +++N+     L   + SAV     
Sbjct: 374 LLKNTVGVLFIATPHKGSPVANWGYSVFQPTEDVRMLNENNAINRKLNEDF-SAVSKEIP 432

Query: 158 TVCSLVET-RRTLMSVLWLRIVSLQSADAGVGSVEGAGVDHRQVCKPS 18
            + S+VET    +++     +V  +SA    G+V      H  +CKP+
Sbjct: 433 VIVSMVETVESNIIANAKSIVVPNKSAVFEQGAVYHIADVHLNLCKPT 480


>Z69789-6|CAA93652.1|  506|Caenorhabditis elegans Hypothetical
           protein F17H10.1 protein.
          Length = 506

 Score = 36.3 bits (80), Expect = 0.015
 Identities = 27/108 (25%), Positives = 53/108 (49%), Gaps = 1/108 (0%)
 Frame = -3

Query: 338 LWTSSSGFMFYSVPHRGSPLADIKTPITARSIELLEISQNSRSTLSLQSRWMSAVRSGSA 159
           L  ++ G +F + PH+GSP+A+    +   + ++  +++N+     L   + SAV     
Sbjct: 374 LLKNTVGVLFIATPHKGSPVANWGYSVFQPTEDVRMLNENNAINRKLNEDF-SAVSKEIP 432

Query: 158 TVCSLVET-RRTLMSVLWLRIVSLQSADAGVGSVEGAGVDHRQVCKPS 18
            + S+VET    +++     +V  +SA    G+V      H  +CKP+
Sbjct: 433 VIVSMVETVESNIIANAKSIVVPNKSAVFEQGAVYHIADVHLNLCKPT 480


>Z79639-1|CAB01916.1| 2948|Caenorhabditis elegans Hypothetical
           protein F54E4.1 protein.
          Length = 2948

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 19/75 (25%), Positives = 32/75 (42%)
 Frame = -3

Query: 503 EGSEMCSEKSYTKRDFLEDGAGYNDCEHTKTGGANEDNRYNDDAVILDELSARAGLWTSS 324
           E  +    +S  KRDF  +       + T+TGG+   +  +   ++  +L      WT S
Sbjct: 459 EPEDSSPTESEKKRDFEHENVRSEHSDATRTGGSVSSDAPSSKDILDVKLEILLRQWTKS 518

Query: 323 SGFMFYSVPHRGSPL 279
           +  +F   P  GS L
Sbjct: 519 NDVLFSIHPVDGSLL 533


>AL032657-4|CAD27614.1| 1070|Caenorhabditis elegans Hypothetical
            protein Y47H9C.4b protein.
          Length = 1070

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 21/57 (36%), Positives = 29/57 (50%)
 Frame = -3

Query: 431  DCEHTKTGGANEDNRYNDDAVILDELSARAGLWTSSSGFMFYSVPHRGSPLADIKTP 261
            + E+ K  G +   R N+D   LDE+   AG  +SSS     S   R +P ADI +P
Sbjct: 1000 ELENKKIHGRSAAGRGNNDYASLDEV---AGEGSSSSASA--SASRRENPYADISSP 1051


>L14745-4|AAA27921.1|  419|Caenorhabditis elegans Hypothetical
           protein C02F5.6a protein.
          Length = 419

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 10/43 (23%), Positives = 23/43 (53%)
 Frame = -2

Query: 273 HQDPNNSQEHRTPGDQPKQPVYLVAAVPLDVSGAQRQRHRLQP 145
           HQDPN+ +  +   ++ +  +Y +A    D    +++++  QP
Sbjct: 51  HQDPNDRKNKKNNDEEWRDSIYNIATDESDTDDHEQRKNFFQP 93


>L14745-3|AAM15539.1|  450|Caenorhabditis elegans Hypothetical
           protein C02F5.6b protein.
          Length = 450

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 10/43 (23%), Positives = 23/43 (53%)
 Frame = -2

Query: 273 HQDPNNSQEHRTPGDQPKQPVYLVAAVPLDVSGAQRQRHRLQP 145
           HQDPN+ +  +   ++ +  +Y +A    D    +++++  QP
Sbjct: 51  HQDPNDRKNKKNNDEEWRDSIYNIATDESDTDDHEQRKNFFQP 93


>AF039037-5|AAC48228.3|  714|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 40 protein.
          Length = 714

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = +1

Query: 208 VDRLFWLISRSSMLLAVIGVLMSASGD 288
           VDR+ W++S  SM+  V+ +   +SGD
Sbjct: 539 VDRIMWVLSLGSMVFVVLVIQDYSSGD 565


>Z92784-1|CAB07192.1|  204|Caenorhabditis elegans Hypothetical
           protein F31C3.1 protein.
          Length = 204

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = -2

Query: 315 HVLFGATPRVAAGRHQDPNNSQEHRTPGDQPKQPVYLVAA 196
           HV+FG   ++  G        Q  + PGD+PKQ V + A+
Sbjct: 151 HVVFG---KILEGMDVVRKIEQTEKLPGDRPKQDVIIAAS 187


>U31948-1|AAC47126.1|  204|Caenorhabditis elegans cyclophilin
           isoform 5 protein.
          Length = 204

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = -2

Query: 315 HVLFGATPRVAAGRHQDPNNSQEHRTPGDQPKQPVYLVAA 196
           HV+FG   ++  G        Q  + PGD+PKQ V + A+
Sbjct: 151 HVVFG---KILEGMDVVRKIEQTEKLPGDRPKQDVIIAAS 187


>Z95559-9|CAI46625.1|  510|Caenorhabditis elegans Hypothetical
           protein Y41E3.18 protein.
          Length = 510

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 10/22 (45%), Positives = 11/22 (50%)
 Frame = +3

Query: 249 PGCYWGLDVGQRRPSVWHRIKH 314
           P CY   D   R    WHR+KH
Sbjct: 134 PRCYRITDAFDRFKGTWHRVKH 155


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,962,479
Number of Sequences: 27780
Number of extensions: 307315
Number of successful extensions: 797
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 783
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 797
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1166125180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)