Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_pT_M19
         (315 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC926.04c |hsp90|swo1|heat shock protein Hsp90|Schizosaccharom...    29   0.17 
SPAC22F8.11 |plc1||phosphoinositide phospholipase C Plc1|Schizos...    28   0.38 
SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces po...    26   1.5  
SPCC1450.14c |ero12||ER oxidoreductin Ero1b|Schizosaccharomyces ...    25   2.7  
SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch...    25   2.7  
SPBC418.02 |||NatA N-acetyltransferase complex subunit |Schizosa...    25   3.6  
SPCC1322.01 ||SPCC23B6.06|3'-5' exonuclease for RNA 3' ss-tail|S...    24   4.7  
SPCC736.07c |||cell polarity protein |Schizosaccharomyces pombe|...    24   6.3  
SPAP7G5.04c |lys1||aminoadipate-semialdehyde dehydrogenase |Schi...    24   6.3  
SPAC11E3.11c |||guanyl-nucleotide exchange factor |Schizosacchar...    23   8.3  
SPCC1682.15 |mug122||PX/PXA domain protein|Schizosaccharomyces p...    23   8.3  
SPAC17G6.12 |cul1|pcu1|cullin 1|Schizosaccharomyces pombe|chr 1|...    23   8.3  
SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-gluca...    23   8.3  

>SPAC926.04c |hsp90|swo1|heat shock protein
           Hsp90|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 704

 Score = 29.1 bits (62), Expect = 0.17
 Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
 Frame = +2

Query: 137 VVAVTRVDLLRSC-QSYNEDGEQNEQFREHFEQFSK 241
           ++ V R +L+R C   +NE  E  E F+  ++ FSK
Sbjct: 383 IMKVIRKNLVRRCLDMFNEIAEDKENFKTFYDAFSK 418


>SPAC22F8.11 |plc1||phosphoinositide phospholipase C
           Plc1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 899

 Score = 27.9 bits (59), Expect = 0.38
 Identities = 18/56 (32%), Positives = 23/56 (41%)
 Frame = -2

Query: 305 RPADEQIFFKSSRAGVLDHQSTLKTAQNVRETVHSVRRPRCSSGKTSTDLLWLRLQ 138
           R   EQ FFK   +   D  STL+   N   +  S +    S  K    L WL L+
Sbjct: 55  RKKSEQDFFKMLSSRDRDAHSTLRKRSNSLSSFLSTKSTSASENKFHGGLNWLSLK 110


>SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 658

 Score = 25.8 bits (54), Expect = 1.5
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = -1

Query: 153 LVTATTITDIRIQATSVIPDTXPWPMERTVAMLP 52
           +V  TTIT +     +++ +T   PME T  +LP
Sbjct: 120 MVETTTITPMVEAMITLMEETMTTPMEETTTILP 153


>SPCC1450.14c |ero12||ER oxidoreductin Ero1b|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 571

 Score = 25.0 bits (52), Expect = 2.7
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = +2

Query: 206 EQFREHFEQFSKLTDDLGHRR 268
           E FREHF+  S L D +G  R
Sbjct: 375 EDFREHFKTVSALMDCVGCER 395


>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
            homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2609

 Score = 25.0 bits (52), Expect = 2.7
 Identities = 11/27 (40%), Positives = 18/27 (66%), Gaps = 2/27 (7%)
 Frame = -2

Query: 242  TLKTAQNVRETVHSVRR--PRCSSGKT 168
            T+   Q +R+ +H++R+  PR SS KT
Sbjct: 1161 TITAEQEMRDLLHNIRQPLPRSSSSKT 1187


>SPBC418.02 |||NatA N-acetyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 695

 Score = 24.6 bits (51), Expect = 3.6
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = -1

Query: 255 RSSVNFENCSKCSRNCSFCSPSSL*LWQD 169
           R + ++ N  KC +N    SP++  LW D
Sbjct: 87  RETKDYNNSLKCYQNALAISPNNESLWYD 115


>SPCC1322.01 ||SPCC23B6.06|3'-5' exonuclease for RNA 3'
           ss-tail|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 957

 Score = 24.2 bits (50), Expect = 4.7
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = +2

Query: 173 CQSYNEDGEQNEQFREHFEQFSKLTDDLG 259
           CQ Y E G Q  +     +QF+K   D+G
Sbjct: 422 CQVYKEVGLQTHERGLTSDQFAKFLTDIG 450


>SPCC736.07c |||cell polarity protein |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 699

 Score = 23.8 bits (49), Expect = 6.3
 Identities = 10/39 (25%), Positives = 21/39 (53%)
 Frame = -2

Query: 293 EQIFFKSSRAGVLDHQSTLKTAQNVRETVHSVRRPRCSS 177
           +Q   ++ ++G  DH ++ +      E++HS+   R SS
Sbjct: 321 KQAKLETKKSGNKDHATSSEKLSLGNESIHSINETRSSS 359


>SPAP7G5.04c |lys1||aminoadipate-semialdehyde dehydrogenase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1419

 Score = 23.8 bits (49), Expect = 6.3
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = -2

Query: 299 ADEQIFFKSSRAGVLDHQSTLKTAQNVRETVHSVRRPR 186
           AD+QI  +  R  + +  + L    NVRE +  VRR +
Sbjct: 741 ADDQIKIRGFRIELGEINTHLSRHPNVRENITLVRRDK 778


>SPAC11E3.11c |||guanyl-nucleotide exchange factor
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 942

 Score = 23.4 bits (48), Expect = 8.3
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -2

Query: 203  SVRRPRCSSGKTSTDLLWLRLQQLRIYVSRLRR 105
            S  R    + K  +D L L L +LR+Y+S L +
Sbjct: 902  STFRRAVENWKYKSDYLQLNLVRLRVYISVLEK 934


>SPCC1682.15 |mug122||PX/PXA domain protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 749

 Score = 23.4 bits (48), Expect = 8.3
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = -2

Query: 278 KSSRAGVLDHQSTL 237
           +S R G+L HQSTL
Sbjct: 468 RSERTGLLSHQSTL 481


>SPAC17G6.12 |cul1|pcu1|cullin 1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 767

 Score = 23.4 bits (48), Expect = 8.3
 Identities = 13/51 (25%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
 Frame = -2

Query: 296 DEQIFFKSSRAGVLDHQSTLKTAQNVRETVHSVR---RPRCSSGKTSTDLL 153
           D ++  +S+   ++  + TLK    V+ET+  ++    P+ S  K   D+L
Sbjct: 699 DRKLLLQSAIVRIMKARRTLKHVVLVKETIDQIKSRFTPKVSDIKQCIDML 749


>SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-glucan
           synthase Ags1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 2410

 Score = 23.4 bits (48), Expect = 8.3
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = -2

Query: 257 LDHQSTLKTAQNVRETVHSVRR 192
           LDH       +NV   +HS+RR
Sbjct: 557 LDHFDIASAHRNVYRNIHSIRR 578


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 836,674
Number of Sequences: 5004
Number of extensions: 12051
Number of successful extensions: 60
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 58
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 60
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 83936266
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)