Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P17_pT_M19
(315 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_0117 - 13860418-13860524,13860612-13860810,13860969-138611... 30 0.33
01_06_0876 - 32654209-32654238,32654357-32654672,32654833-326549... 27 3.1
02_01_0425 - 3102629-3104692,3106505-3108546,3109918-3109989,311... 27 4.1
11_04_0318 + 16336356-16336358,16337254-16337484,16337580-163376... 26 7.1
02_04_0130 + 20025414-20025531,20026357-20026585,20026909-200270... 26 7.1
07_03_1452 - 26629219-26629428,26630113-26630280,26630363-266304... 25 9.4
07_01_0879 - 7290890-7291694,7291810-7291943,7292089-7292227,729... 25 9.4
>12_02_0117 -
13860418-13860524,13860612-13860810,13860969-13861148,
13861230-13861375,13862185-13862323,13863076-13863153,
13863654-13863722,13863806-13863925,13864792-13864875,
13864961-13865032,13865204-13865345,13866016-13866023
Length = 447
Score = 30.3 bits (65), Expect = 0.33
Identities = 22/57 (38%), Positives = 31/57 (54%), Gaps = 5/57 (8%)
Frame = -2
Query: 308 IRPAD-EQIFFKSSRAGVLDH----QSTLKTAQNVRETVHSVRRPRCSSGKTSTDLL 153
+ PA EQIF SS AGV + Q + ++ V E V+ +RR RCS + S +L
Sbjct: 326 VNPATLEQIFGVSSLAGVPNQLVLEQYDNELSRKVNEVVNEIRRQRCSYLRYSLQVL 382
>01_06_0876 -
32654209-32654238,32654357-32654672,32654833-32654901,
32655238-32655275,32655418-32655478,32655550-32655617,
32655729-32655889,32656687-32656751,32656883-32656956,
32658158-32658245,32658800-32658879,32659168-32659224,
32659332-32659404,32659524-32659762,32659846-32660025,
32660150-32660440
Length = 629
Score = 27.1 bits (57), Expect = 3.1
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = -2
Query: 302 PADEQIFFKSSRAGVLDHQSTLKTAQNVRETVHSV 198
P E +F + AG+ H+ +K N+RE+VH V
Sbjct: 458 PGSETLFPGNEVAGIY-HEIAMKDGINLRESVHGV 491
>02_01_0425 -
3102629-3104692,3106505-3108546,3109918-3109989,
3110157-3111444
Length = 1821
Score = 26.6 bits (56), Expect = 4.1
Identities = 15/55 (27%), Positives = 27/55 (49%)
Frame = -2
Query: 296 DEQIFFKSSRAGVLDHQSTLKTAQNVRETVHSVRRPRCSSGKTSTDLLWLRLQQL 132
D+ + + + G+ +S K + + E +S P SSG +D +W RL +L
Sbjct: 77 DDVVGWHYDKRGLFSMKSAYKVQKEI-ERRNSRSAPASSSGGAQSDQVWKRLWKL 130
>11_04_0318 +
16336356-16336358,16337254-16337484,16337580-16337654,
16337741-16337839,16339010-16339121,16339586-16339713,
16340022-16340141,16340967-16341047,16341460-16341537,
16341616-16341708,16341880-16341934,16342795-16342871,
16343008-16343079,16343159-16343242,16343620-16343739,
16343824-16343892,16344721-16344798,16345684-16345822,
16345990-16346154,16346239-16346384,16346501-16346680,
16346834-16346922,16346997-16347028,16347120-16347226
Length = 810
Score = 25.8 bits (54), Expect = 7.1
Identities = 18/43 (41%), Positives = 23/43 (53%), Gaps = 5/43 (11%)
Frame = -2
Query: 293 EQIFFKSSRAGVLDHQSTLKTAQN-----VRETVHSVRRPRCS 180
EQIF SS A L Q+ L+ N V E ++ +RR RCS
Sbjct: 721 EQIFGVSSLAA-LPSQAVLEQFDNELSRKVNEVINEIRRQRCS 762
>02_04_0130 +
20025414-20025531,20026357-20026585,20026909-20027032,
20027441-20027497,20027613-20027804,20027882-20027959,
20028437-20028619,20028715-20028795,20029196-20029228,
20029448-20029513,20029591-20029683,20030106-20030231,
20030395-20030508,20030973-20031068,20031159-20031256,
20031416-20031831,20032025-20032473,20032810-20032905
Length = 882
Score = 25.8 bits (54), Expect = 7.1
Identities = 16/55 (29%), Positives = 24/55 (43%)
Frame = +1
Query: 82 PGXCIRDXRRSLDTYIRNCCSRNQSRSVEVLPELQRGRRTE*TVSRTF*AVFKVD 246
P R RSL+ ++C + + E LP++ R R + T S A F D
Sbjct: 674 PRHSSRSSGRSLEESDKSCPENTEGEAKENLPDVLRTTRDDATTSSNGEAFFSSD 728
>07_03_1452 -
26629219-26629428,26630113-26630280,26630363-26630425,
26630499-26630606,26630820-26630932,26631026-26631322,
26631424-26631502,26631733-26631841,26631927-26631968,
26632467-26632597,26633482-26633623,26633713-26633828,
26634121-26634657
Length = 704
Score = 25.4 bits (53), Expect = 9.4
Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
Frame = +2
Query: 59 IATVRSIGQGXVSGXTDVAWIRISVIVVAVTRVDLLRSCQSYNE-DGEQN-EQFREHFE 229
+ T+ S G G V+G D WI + + A+ D+ R + + G N QF + FE
Sbjct: 242 VLTLPSSGSGRVNGADDPLWIDLQ-MTTAIAIEDVRREVRILSSLTGHSNLVQFYDAFE 299
>07_01_0879 -
7290890-7291694,7291810-7291943,7292089-7292227,
7292338-7292585
Length = 441
Score = 25.4 bits (53), Expect = 9.4
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = -2
Query: 227 QNVRETVHSVRRPRCSSGKTSTD 159
+ RE+ S PRCSSG +S D
Sbjct: 345 ETTRESDGSATSPRCSSGLSSDD 367
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,462,950
Number of Sequences: 37544
Number of extensions: 80513
Number of successful extensions: 243
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 239
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 243
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 386885760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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