Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_pT_M19
         (315 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL021479-1|CAA16321.2|  346|Caenorhabditis elegans Hypothetical ...    26   5.0  
Z48809-1|CAA88745.1| 1299|Caenorhabditis elegans Hypothetical pr...    26   6.6  
AF100656-5|AAF99963.2|  259|Caenorhabditis elegans Hypothetical ...    25   8.7  

>AL021479-1|CAA16321.2|  346|Caenorhabditis elegans Hypothetical
           protein Y22F5A.2 protein.
          Length = 346

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 8/24 (33%), Positives = 18/24 (75%)
 Frame = +1

Query: 106 RRSLDTYIRNCCSRNQSRSVEVLP 177
           R+++ ++  N C +NQSR++ ++P
Sbjct: 306 RKAILSFFCNFCQQNQSRTITIVP 329


>Z48809-1|CAA88745.1| 1299|Caenorhabditis elegans Hypothetical protein
            T01E8.3 protein.
          Length = 1299

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = +2

Query: 161  LLRSCQSYNEDGEQNEQFREHFEQFSKLTDDLGHRRVT 274
            LL   Q  + +G Q  +   HF Q S+L     HR++T
Sbjct: 1180 LLVDVQMCSREGTQLIRSSSHFLQASRLAPVFAHRKIT 1217


>AF100656-5|AAF99963.2|  259|Caenorhabditis elegans Hypothetical
           protein F49F1.6 protein.
          Length = 259

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 15/53 (28%), Positives = 25/53 (47%), Gaps = 5/53 (9%)
 Frame = -1

Query: 222 CSRNCSFCSPSSL*LWQDLNRSTLVTATTI---TDIRIQATSV--IPDTXPWP 79
           C R C  C  + + + Q    +T+   TT+   T  ++ AT+   +P T P P
Sbjct: 168 CPRTCGVCGSTGVPMAQTTLLTTVKPTTTVVPSTTTKLPATTTKKLPSTTPKP 220


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,762,066
Number of Sequences: 27780
Number of extensions: 72805
Number of successful extensions: 313
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 309
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 313
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 355337994
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)