Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_pT_M17
         (741 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL021488-2|CAA16367.2|  378|Caenorhabditis elegans Hypothetical ...   123   2e-28

>AL021488-2|CAA16367.2|  378|Caenorhabditis elegans Hypothetical
           protein Y45F10A.4 protein.
          Length = 378

 Score =  123 bits (296), Expect = 2e-28
 Identities = 68/146 (46%), Positives = 88/146 (60%), Gaps = 7/146 (4%)
 Frame = -3

Query: 739 AYHRAMDXMSRLNRIAARLMHKYNAHGSTDVTGFGLLGHAQNLASHQKNEVSFVIHNLPV 560
           A+ +  + MSRLNR AA+L+HKY+AH STDVTGFGLLGHA+NLA  QK  + F+I  LP+
Sbjct: 231 AFKQVCEQMSRLNRNAAKLLHKYDAHSSTDVTGFGLLGHAENLARVQKQPMEFIIEKLPI 290

Query: 559 IAKMAAVAKAC----GNMFQLLQGHAPETSGGLLICLPREQAAAYCKDIEKQEGYQAWII 392
           I  M  +A       G  F+L QG + ETSGGLLI +  E A  Y  ++   +   AWII
Sbjct: 291 IEYMDEIADKMIAKGGEGFKLYQGTSAETSGGLLIAMSEENAKKYIAELSSLDNAPAWII 350

Query: 391 GIV---EKGNRTARIIDKPRVIEVPA 323
           G V      +  ARI+     I VP+
Sbjct: 351 GKVTAKTTDSSIARILPDAVRISVPS 376


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,328,604
Number of Sequences: 27780
Number of extensions: 335805
Number of successful extensions: 883
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 845
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 882
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1745954468
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)