Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_pT_M16
         (639 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292370-1|CAL23182.1|  418|Tribolium castaneum gustatory recept...    27   0.17 
DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase rever...    21   8.7  
AM712901-1|CAN84640.1|  205|Tribolium castaneum hypothetical pro...    21   8.7  

>AM292370-1|CAL23182.1|  418|Tribolium castaneum gustatory receptor
           candidate 49 protein.
          Length = 418

 Score = 26.6 bits (56), Expect = 0.17
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = +2

Query: 233 SLQQLTNLSQNNKNNVILILNPKRIVKHN 319
           S  Q   L  +NKNN  L+LN   +VKH+
Sbjct: 13  SSTQPNYLILSNKNNTYLVLNKYLLVKHS 41


>DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase reverse
           transcriptase protein.
          Length = 596

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +2

Query: 275 NVILILNPKRIVKHNLVI 328
           NV   L PK ++KHNL +
Sbjct: 105 NVEPNLRPKLLLKHNLFL 122


>AM712901-1|CAN84640.1|  205|Tribolium castaneum hypothetical
           protein protein.
          Length = 205

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -1

Query: 312 LTIRLGFSIKMTLFLLFCD 256
           LT  +G +I   LFLL CD
Sbjct: 5   LTACVGSAIAGFLFLLICD 23


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 120,761
Number of Sequences: 336
Number of extensions: 2149
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 16501678
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)