Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_pT_M08
         (520 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces ...    27   2.2  
SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces pom...    26   3.9  
SPAC688.08 |srb8|med12|mediator complex subunit Srb8 |Schizosacc...    26   3.9  

>SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 2493

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = -2

Query: 234 LGLFGTLVKSTLPFSTIRVRMITAYDYC 151
           LG+FG L  S +   +IR    T+YD+C
Sbjct: 540 LGVFGFLADSKVFLESIRPFFGTSYDFC 567


>SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1692

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 17/48 (35%), Positives = 25/48 (52%)
 Frame = -3

Query: 512  AHYCILFVAQIYLETIVYNHHALKVFL*NHKQSQNLFLVRIT*NKL*N 369
            A+  I   AQ+ LET+  N + L  F  N   S++L  + I+ N L N
Sbjct: 867  ANLSISSTAQVLLETLYANGNRLSSFPKNEALSKSLRFLDISTNNLQN 914


>SPAC688.08 |srb8|med12|mediator complex subunit Srb8
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1233

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -2

Query: 60  MTNLLLVNLFHFVYNNCKC 4
           MT L+  NL HF + +C C
Sbjct: 615 MTKLIADNLVHFSFQSCAC 633


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,970,847
Number of Sequences: 5004
Number of extensions: 35931
Number of successful extensions: 56
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 55
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 56
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 210309424
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)