Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_pT_M08
         (520 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0666 - 19823490-19823822,19823912-19824185,19824311-19826292     30   1.3  
01_01_0216 + 1843413-1843509,1844583-1844694,1844841-1844908,184...    29   2.2  

>08_02_0666 - 19823490-19823822,19823912-19824185,19824311-19826292
          Length = 862

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 26/79 (32%), Positives = 42/79 (53%), Gaps = 2/79 (2%)
 Frame = -1

Query: 271 VGF*VNFEVLVI-PGFIWHVSKIYPAI*YH*SANDYSV*LLFT-FLIFVNYLTKPARDLL 98
           +GF +NF V+ + PGF   +S  + A  Y+  A   ++ L +   L+  + + K   D L
Sbjct: 557 IGFGLNFRVIALSPGFR-KLSLEHFASSYN-KATRRAIFLDYDGTLVPQSSINKAPSDEL 614

Query: 97  TNIISKTCDNLNNDKFIVS 41
             I++  CD+  ND FIVS
Sbjct: 615 ITILNSLCDDPKNDVFIVS 633


>01_01_0216 +
           1843413-1843509,1844583-1844694,1844841-1844908,
           1845165-1845297,1845404-1845503,1845562-1845722,
           1846095-1846188,1846273-1846426,1846597-1846743,
           1846819-1846892,1846985-1847073,1847161-1847275,
           1847569-1847751
          Length = 508

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 22/82 (26%), Positives = 42/82 (51%), Gaps = 4/82 (4%)
 Frame = -2

Query: 516 LSTLLYFICCTNIFRNNRV*SSCFKSIPIKS*TVTKFIFSENYMKQIMKQSLIILS---- 349
           ++ ++Y+   T++FR+  + S    S  + +  V   + + + M +  ++SL+I S    
Sbjct: 323 INAVVYY--STSVFRSAGIASDVAASALVGAANVFGTMIASSLMDKQGRKSLLITSFSGM 380

Query: 348 NVSLLFLSLRYKMACLCVYSGP 283
             S+L LSL +    L  YSGP
Sbjct: 381 AASMLLLSLSFTWKALAPYSGP 402


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,646,999
Number of Sequences: 37544
Number of extensions: 170634
Number of successful extensions: 228
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 227
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 228
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1130733700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)