Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P17_pT_M02
(759 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC222.06 |mak16||nuclear HMG-like acidic protein Mak16|Schizos... 33 0.044
SPBC13G1.10c |mug81||ATP-dependent RNA helicase Slh1|Schizosacch... 28 1.3
SPBC1289.10c |||transcription factor |Schizosaccharomyces pombe|... 26 1.4
SPAC11G7.02 |pub1||ubiquitin-protein ligase E3|Schizosaccharomyc... 28 1.7
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi... 27 2.2
SPAC1786.02 |||phospholipase |Schizosaccharomyces pombe|chr 1|||... 27 2.9
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce... 27 3.8
SPCC553.04 |cyp9||WD repeat containing cyclophilin family peptid... 27 3.8
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 26 5.1
SPBC119.16c |||conserved fungal protein|Schizosaccharomyces pomb... 26 6.7
SPAC1250.01 |snf21|SPAC29A4.21|ATP-dependent DNA helicase Snf21|... 26 6.7
>SPAC222.06 |mak16||nuclear HMG-like acidic protein
Mak16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 302
Score = 33.1 bits (72), Expect = 0.044
Identities = 19/63 (30%), Positives = 28/63 (44%)
Frame = +3
Query: 453 DLGERERADPERDLEFLEPEADRERLLDLERDFDFSRDGDLDLPEPLDFSEPRGDFEPDF 632
D GE E E +LEF+ + D E + DLE + + E + SE D + D
Sbjct: 198 DEGEEEEEREEAELEFVSDDEDEEEISDLEDWLGSDQSMETSESEEEESSESESDEDEDE 257
Query: 633 DRE 641
D +
Sbjct: 258 DNK 260
>SPBC13G1.10c |mug81||ATP-dependent RNA helicase
Slh1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1935
Score = 28.3 bits (60), Expect = 1.3
Identities = 14/44 (31%), Positives = 26/44 (59%)
Frame = +1
Query: 1 GIINMFKTQGRVNVKVYPTYSSFSQNHYVLTTHSTLTHYVNPVS 132
G++++ + GR P + S S Y++TTH L+HY++ V+
Sbjct: 651 GVLDVLQIFGRAG---RPQFES-SAVAYIITTHDKLSHYISVVT 690
>SPBC1289.10c |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 743
Score = 25.8 bits (54), Expect(2) = 1.4
Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
Frame = +1
Query: 520 ENDSL--TSNATSTSRVTATWTFQSLWTSRSHEETSNPILIANETFPS 657
EN S T+NA + V W Q +SR S+P+ + ++ PS
Sbjct: 566 ENSSTSDTNNADNGMDVMGNWQLQQTHSSRPTPNASSPLDVRSKQKPS 613
Score = 20.6 bits (41), Expect(2) = 1.4
Identities = 11/45 (24%), Positives = 22/45 (48%)
Frame = +1
Query: 409 PSSQTLNANENALNQISVNENVPILNEISSS*SRKRTENDSLTSN 543
P SQT+ + A + + ++ E ++S + T+N + T N
Sbjct: 489 PLSQTITESSVAKTKSTTPKSTDTPTEATTSPVKVSTKNSNTTEN 533
>SPAC11G7.02 |pub1||ubiquitin-protein ligase E3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 767
Score = 27.9 bits (59), Expect = 1.7
Identities = 21/57 (36%), Positives = 30/57 (52%)
Frame = +1
Query: 382 RSWSWLLKTPSSQTLNANENALNQISVNENVPILNEISSS*SRKRTENDSLTSNATS 552
RS +W+ SS A L+ + + NV + SSS + +RTE LTSNAT+
Sbjct: 229 RSTTWIRPNLSS-VAGAAAAELHSSASSANVTEGVQPSSSNAARRTEASVLTSNATT 284
>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 374
Score = 27.5 bits (58), Expect = 2.2
Identities = 21/84 (25%), Positives = 43/84 (51%)
Frame = +1
Query: 373 SPPRSWSWLLKTPSSQTLNANENALNQISVNENVPILNEISSS*SRKRTENDSLTSNATS 552
SP S + +PSS + +++ ++ + S + + + SSS S + + S +S+++S
Sbjct: 143 SPSSSSTTTTTSPSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 202
Query: 553 TSRVTATWTFQSLWTSRSHEETSN 624
+S + T TS SH +S+
Sbjct: 203 SSSSSVPITSS---TSSSHSSSSS 223
Score = 26.2 bits (55), Expect = 5.1
Identities = 17/69 (24%), Positives = 41/69 (59%)
Frame = +1
Query: 412 SSQTLNANENALNQISVNENVPILNEISSS*SRKRTENDSLTSNATSTSRVTATWTFQSL 591
SS + +++ ++ + S + +VPI + SSS + + S +S+++S+SR +++ +F +
Sbjct: 188 SSSSSSSSSSSSSSSSSSSSVPITSSTSSS----HSSSSSSSSSSSSSSRPSSSSSFITT 243
Query: 592 WTSRSHEET 618
+S + T
Sbjct: 244 MSSSTFIST 252
>SPAC1786.02 |||phospholipase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 644
Score = 27.1 bits (57), Expect = 2.9
Identities = 16/64 (25%), Positives = 32/64 (50%)
Frame = +1
Query: 349 LSKRNWRESPPRSWSWLLKTPSSQTLNANENALNQISVNENVPILNEISSS*SRKRTEND 528
LS+RNW++ PP + P ++ +++E +N + E + N+ R N+
Sbjct: 29 LSRRNWKKPPPFPSTNASYAPVIRSCDSSEIMVNSLPRGELPDLENDFIE--KRLSNANE 86
Query: 529 SLTS 540
+LT+
Sbjct: 87 ALTT 90
>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1957
Score = 26.6 bits (56), Expect = 3.8
Identities = 20/70 (28%), Positives = 33/70 (47%), Gaps = 1/70 (1%)
Frame = +1
Query: 424 LNANENALNQISVN-ENVPILNEISSS*SRKRTENDSLTSNATSTSRVTATWTFQSLWTS 600
L +NE ++ + N EN+ L + +KR END L S + S S T+
Sbjct: 1010 LASNERLMDDLKNNGENIASLQ---TEIEKKRAENDDLQSKLSVVSSEYENLLLISSQTN 1066
Query: 601 RSHEETSNPI 630
+S E+ +N +
Sbjct: 1067 KSLEDKTNQL 1076
>SPCC553.04 |cyp9||WD repeat containing cyclophilin family
peptidyl-prolyl cis-trans isomerase
Cyp9|Schizosaccharomyces pombe|chr 3|||Manual
Length = 610
Score = 26.6 bits (56), Expect = 3.8
Identities = 12/44 (27%), Positives = 25/44 (56%)
Frame = +1
Query: 22 TQGRVNVKVYPTYSSFSQNHYVLTTHSTLTHYVNPVSNHYASDF 153
TQG +++K+YP + + ++ TTH+ +Y N + + +F
Sbjct: 462 TQGDISIKLYPEEAPKAVQNF--TTHAENGYYDNTIFHRIIKNF 503
>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 4717
Score = 26.2 bits (55), Expect = 5.1
Identities = 18/64 (28%), Positives = 25/64 (39%)
Frame = +3
Query: 432 ERERSEPDLGERERADPERDLEFLEPEADRERLLDLERDFDFSRDGDLDLPEPLDFSEPR 611
+ S+P + D DL+ E E D + DLE D D + + EP
Sbjct: 4070 QENNSQPPPENEDHLDLPEDLKLDEKEGDVSKDSDLE-DMDMEAADENKEEADAEKDEPM 4128
Query: 612 GDFE 623
DFE
Sbjct: 4129 QDFE 4132
Score = 26.2 bits (55), Expect = 5.1
Identities = 12/23 (52%), Positives = 12/23 (52%)
Frame = +3
Query: 573 LDLPEPLDFSEPRGDFEPDFDRE 641
LDLPE L E GD D D E
Sbjct: 4084 LDLPEDLKLDEKEGDVSKDSDLE 4106
>SPBC119.16c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 448
Score = 25.8 bits (54), Expect = 6.7
Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Frame = +1
Query: 34 VNVKVYPTYSSFS-QNHYVLTTHSTLTHYVNPVSNHYASDFE 156
+N K Y SF ++ + LTT+S + Y+ S+H +D E
Sbjct: 315 INFKGLSRYLSFDGESSWGLTTYSLASKYIFNTSHHNLTDQE 356
>SPAC1250.01 |snf21|SPAC29A4.21|ATP-dependent DNA helicase
Snf21|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1199
Score = 25.8 bits (54), Expect = 6.7
Identities = 15/53 (28%), Positives = 26/53 (49%)
Frame = +1
Query: 58 YSSFSQNHYVLTTHSTLTHYVNPVSNHYASDFETFRSRSPIQNSF*S*LWMKL 216
Y + H + T S LT N ++ +Y+S + + +P+QN+ LW L
Sbjct: 540 YMIIDEGHRMKNTQSKLT---NTLTTYYSSRYRLILTGTPLQNNLPE-LWALL 588
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,833,999
Number of Sequences: 5004
Number of extensions: 34888
Number of successful extensions: 155
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 154
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 363302114
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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