Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_pT_L24
         (641 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr...    26   4.0  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    25   7.0  
SPCC584.04 |sup35|erf3|translation release factor eRF3 |Schizosa...    25   7.0  
SPCC18.08 |||lysine-tRNA ligase|Schizosaccharomyces pombe|chr 3|...    25   9.3  
SPBC725.08 |||transcription factor |Schizosaccharomyces pombe|ch...    25   9.3  

>SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1275

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = -1

Query: 548 TPAPLKLSSNITLKPSARPPKPLARFTKPP 459
           TP+P++L S+  L+P + P  P   +  PP
Sbjct: 223 TPSPIRLYSSDALRPQS-PLSPSVEYLTPP 251


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 18/42 (42%), Positives = 18/42 (42%), Gaps = 2/42 (4%)
 Frame = -1

Query: 566 APSTRDTPAPLKLSSNITLKPSARPPKPLARFTK--PPTGTA 447
           APST   P PL  SS     P A PP    R     PP G A
Sbjct: 369 APSTGRQPPPLS-SSRAVSNPPAPPPAIPGRSAPALPPLGNA 409


>SPCC584.04 |sup35|erf3|translation release factor eRF3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 662

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = -1

Query: 566 APSTRDTPAPLKLSSNITLKPSARPP 489
           A S  +TPAP K++S  T K +A PP
Sbjct: 154 AQSKTETPAP-KVTSESTKKETAAPP 178


>SPCC18.08 |||lysine-tRNA ligase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 531

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 17/69 (24%), Positives = 30/69 (43%), Gaps = 1/69 (1%)
 Frame = +1

Query: 148 RYSIISAIKKKACYFCIADIRK*RLAVVIGLPSVDAEA-VGGDAVSAISGVGRGDSVRCG 324
           R S I     K  +F +    K +L VV    ++  E  + G  +  +  + +GD ++C 
Sbjct: 89  RISSIRYSGSKLAFFDVLYGNK-KLQVVFNKKNIGTEEEMKGKFIPRLKALQKGDCIQCS 147

Query: 325 NAIGGSDQG 351
             +G S  G
Sbjct: 148 GNVGRSGSG 156


>SPBC725.08 |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 609

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = -3

Query: 120 NALVIDNVVPGVGRVW*HRSTVGISRIPRLALSVAIXSKN 1
           N L++ +V+P +     H +  GIS +   +LS     KN
Sbjct: 222 NTLLVSHVLPNISVAQIHNALDGISFVQHFSLSTINLIKN 261


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,650,152
Number of Sequences: 5004
Number of extensions: 26988
Number of successful extensions: 84
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 82
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 84
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 287744314
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)