Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P17_pT_L24
(641 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0157 - 26353971-26354336,26354645-26354726,26354838-263549... 33 0.19
04_03_0252 - 13517763-13517861,13518845-13519315,13519400-135196... 30 1.4
04_04_0965 - 29762388-29762564,29764272-29766361,29766567-297671... 30 1.8
01_05_0438 + 22142646-22143659,22144319-22144858 30 1.8
08_02_1084 - 24232968-24234779 29 2.4
09_03_0199 - 13421210-13421578 29 3.1
05_02_0018 + 5626122-5626200,5626683-5626709,5626972-5627042,562... 29 3.1
01_05_0369 - 21468204-21468595,21471417-21471606,21471680-214718... 29 4.1
05_01_0164 + 1134815-1134911,1135078-1135278,1135875-1136156,113... 28 5.5
02_05_1309 + 35627549-35627679,35628377-35629361 28 5.5
10_08_0338 + 16916429-16916650,16916728-16917900 27 9.6
08_02_0177 - 13786540-13787055 27 9.6
08_02_0176 - 13777476-13777568,13779610-13780053 27 9.6
07_03_1512 + 27288779-27289222,27298101-27298399,27298499-272985... 27 9.6
04_03_0239 + 13205509-13206090 27 9.6
02_01_0554 + 4083020-4083854,4083877-4083906,4084843-4084911,408... 27 9.6
>02_05_0157 -
26353971-26354336,26354645-26354726,26354838-26354933,
26355365-26356068
Length = 415
Score = 33.1 bits (72), Expect = 0.19
Identities = 21/48 (43%), Positives = 23/48 (47%)
Frame = +1
Query: 223 AVVIGLPSVDAEAVGGDAVSAISGVGRGDSVRCGNAIGGSDQGRGEMG 366
A V+GL AV G V A+ GVG G S G A GG G G G
Sbjct: 43 AGVLGLIGETVGAVVGATVGAVDGVGAGASAGGGVAGGGGVAGGGARG 90
>04_03_0252 -
13517763-13517861,13518845-13519315,13519400-13519679,
13519747-13519829
Length = 310
Score = 30.3 bits (65), Expect = 1.4
Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Frame = +1
Query: 259 AVGGDAVSAISGVGRG-DSVRCGNAIGGSDQGRG 357
AVGGDA +A++G G G ++ G GG D G
Sbjct: 57 AVGGDAAAAVAGSGGGMTTMMMGGGGGGGDDAGG 90
>04_04_0965 -
29762388-29762564,29764272-29766361,29766567-29767170,
29768395-29768637,29768704-29770203
Length = 1537
Score = 29.9 bits (64), Expect = 1.8
Identities = 20/50 (40%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
Frame = +1
Query: 220 LAVVIGLPSVDAEAVGGDAVSAISGVGR-GDSVRCGNAIGGSDQGRGEMG 366
L V G PS + A GG + IS VG G V GN GG + G G
Sbjct: 421 LGKVFGGPSENLGAGGGGDRTLISAVGADGGGVGLGNVFGGPRENLGSDG 470
>01_05_0438 + 22142646-22143659,22144319-22144858
Length = 517
Score = 29.9 bits (64), Expect = 1.8
Identities = 16/35 (45%), Positives = 19/35 (54%)
Frame = +1
Query: 265 GGDAVSAISGVGRGDSVRCGNAIGGSDQGRGEMGS 369
GGD+V+ + GVG GD GG GRG GS
Sbjct: 377 GGDSVTVVQGVGDGDG-------GGDGIGRGRKGS 404
>08_02_1084 - 24232968-24234779
Length = 603
Score = 29.5 bits (63), Expect = 2.4
Identities = 17/45 (37%), Positives = 22/45 (48%)
Frame = +1
Query: 235 GLPSVDAEAVGGDAVSAISGVGRGDSVRCGNAIGGSDQGRGEMGS 369
G P A GG+ G+GRG + N +GG GRG MG+
Sbjct: 311 GGPGGGAGGGGGNWGRGGGGMGRGPAGNMRNRMGGPAGGRGIMGN 355
>09_03_0199 - 13421210-13421578
Length = 122
Score = 29.1 bits (62), Expect = 3.1
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = +1
Query: 271 DAVSAISGVGRGDSVRCGNAIGGSDQGRGEMG 366
D+ S + VGRG ++ + IGGS G G G
Sbjct: 86 DSCSKANDVGRGHAIEGKSGIGGSSWGHGRHG 117
>05_02_0018 +
5626122-5626200,5626683-5626709,5626972-5627042,
5627123-5627248,5627726-5627755
Length = 110
Score = 29.1 bits (62), Expect = 3.1
Identities = 15/38 (39%), Positives = 20/38 (52%)
Frame = +1
Query: 235 GLPSVDAEAVGGDAVSAISGVGRGDSVRCGNAIGGSDQ 348
G S DAE+ GG A+ G GRG CG + G ++
Sbjct: 62 GGASHDAESEGGGMRWALVGEGRGSCAACGESGGEGER 99
>01_05_0369 -
21468204-21468595,21471417-21471606,21471680-21471867,
21484028-21484580
Length = 440
Score = 28.7 bits (61), Expect = 4.1
Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
Frame = +1
Query: 199 ADIRK*RLAVVIG-LPSVDAEAVGGDAVSAISGVGRGDSVRCGNAIGGSDQGRGEMGSP 372
AD R R G + + EA G+ V AI G G GD+ G+A ++ +G+P
Sbjct: 368 ADARARRKGAAGGDVDEEEGEAGAGNGVPAIFGRGGGDAGEEGDAAVSKEETAASIGAP 426
>05_01_0164 +
1134815-1134911,1135078-1135278,1135875-1136156,
1136237-1136271,1136356-1136445,1137228-1137357,
1137400-1138004,1138128-1138562
Length = 624
Score = 28.3 bits (60), Expect = 5.5
Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
Frame = -1
Query: 548 TPAPLKLSSNITLKPSARPPKPLARFT--KPPTGTA 447
T A + +S + +KPS +PP+ L R + PT TA
Sbjct: 231 TTARVPISGSTEVKPSLKPPRALPRVATMRAPTNTA 266
>02_05_1309 + 35627549-35627679,35628377-35629361
Length = 371
Score = 28.3 bits (60), Expect = 5.5
Identities = 20/52 (38%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
Frame = +1
Query: 217 RLAVVIGLPSVDAEAVGGDA-VSAISGVGRGDSVRCGNAIGGSDQGRGEMGS 369
R VV+G AE GG A + GVG G G GG + GRG G+
Sbjct: 140 RSGVVVGGTEALAEDEGGGAGEEEVVGVGGGVGAEGGRG-GGGEGGRGGAGA 190
>10_08_0338 + 16916429-16916650,16916728-16917900
Length = 464
Score = 27.5 bits (58), Expect = 9.6
Identities = 16/33 (48%), Positives = 17/33 (51%)
Frame = -3
Query: 315 YGIAAPYTAYGAYGVAPYGLGVHAW*TDHDREP 217
YG A P TAYG YG +G GV A H P
Sbjct: 275 YGHANPGTAYGNYGAGGFG-GVPAGYGGHYGNP 306
>08_02_0177 - 13786540-13787055
Length = 171
Score = 27.5 bits (58), Expect = 9.6
Identities = 14/41 (34%), Positives = 21/41 (51%)
Frame = +1
Query: 250 DAEAVGGDAVSAISGVGRGDSVRCGNAIGGSDQGRGEMGSP 372
+ EA GD V A G G GD+ G+A ++ +G+P
Sbjct: 76 EGEAGAGDGVPAKFGRGGGDAGEEGDAAVSKEETAASIGAP 116
>08_02_0176 - 13777476-13777568,13779610-13780053
Length = 178
Score = 27.5 bits (58), Expect = 9.6
Identities = 14/41 (34%), Positives = 21/41 (51%)
Frame = +1
Query: 250 DAEAVGGDAVSAISGVGRGDSVRCGNAIGGSDQGRGEMGSP 372
+ EA GD V A G G GD+ G+A ++ +G+P
Sbjct: 76 EGEAGAGDGVPAKFGRGGGDAGEEGDAAVSKEETAASIGAP 116
>07_03_1512 +
27288779-27289222,27298101-27298399,27298499-27298589,
27298701-27298766,27299151-27302660,27311604-27312224
Length = 1676
Score = 27.5 bits (58), Expect = 9.6
Identities = 14/41 (34%), Positives = 21/41 (51%)
Frame = +1
Query: 250 DAEAVGGDAVSAISGVGRGDSVRCGNAIGGSDQGRGEMGSP 372
+ EA GD V A G G GD+ G+A ++ +G+P
Sbjct: 76 EGEAGAGDGVPAKFGRGGGDAGEEGDAAVSKEETAASIGAP 116
>04_03_0239 + 13205509-13206090
Length = 193
Score = 27.5 bits (58), Expect = 9.6
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = +1
Query: 265 GGDAVSAISGVGRGDSVRCGNAIGGSDQGRGEMG 366
GGDA+ ++ G GD V N G +D RG+ G
Sbjct: 7 GGDAI--VTSDGGGDEVTARNCDGDADTTRGDGG 38
>02_01_0554 +
4083020-4083854,4083877-4083906,4084843-4084911,
4085170-4085445,4085601-4085720,4086037-4086044
Length = 445
Score = 27.5 bits (58), Expect = 9.6
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = +1
Query: 268 GDAVSAISGVGRGDSVRCGNAIGGSDQGRGEMG 366
G+ +A + VG GD V G G D RGE+G
Sbjct: 202 GEKSAAAAEVGEGDEVEAGEEDGNGD--RGEVG 232
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,971,891
Number of Sequences: 37544
Number of extensions: 224116
Number of successful extensions: 1093
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 990
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1091
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1584867848
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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