Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_pT_L23
         (494 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC428.10 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    27   2.1  
SPBC1604.15 |gpi16||pig-T |Schizosaccharomyces pombe|chr 2|||Manual    26   2.7  
SPCC1827.04 |||ankyrin repeat protein, unknown biological role|S...    25   4.7  
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo...    25   4.7  
SPAC22E12.01 ||SPAC890.09|triose phosphate transporter |Schizosa...    25   8.3  

>SPBC428.10 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 751

 Score = 26.6 bits (56), Expect = 2.1
 Identities = 13/32 (40%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
 Frame = +3

Query: 126 PKAGIHPRLAT*VTX*VTPSGPMYAN-SPRTS 218
           PKA + PR+   +T   + + P+YAN SP++S
Sbjct: 664 PKASLSPRVHKSMTYSPSEASPLYANKSPKSS 695


>SPBC1604.15 |gpi16||pig-T |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 545

 Score = 26.2 bits (55), Expect = 2.7
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = -2

Query: 121 SHSQGLKSTEQAPAXSPKNTHSFEKFSFVIRM 26
           +H   L ST   P+ SP+    FEKF + +R+
Sbjct: 350 NHWGSLSSTIYNPSSSPRTIVYFEKFPWFVRV 381


>SPCC1827.04 |||ankyrin repeat protein, unknown biological
           role|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 600

 Score = 25.4 bits (53), Expect = 4.7
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = -3

Query: 138 FQPSAPHIPKALSQPNRPQHXVRK 67
           F P  PH+PK L+Q    ++  R+
Sbjct: 220 FNPRDPHVPKVLAQKTIHRYTTRR 243


>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1224

 Score = 25.4 bits (53), Expect = 4.7
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = +2

Query: 2   GSYHSIAWHSNNKRKL 49
           G+ +SIAWH NN  +L
Sbjct: 214 GAVNSIAWHPNNATRL 229


>SPAC22E12.01 ||SPAC890.09|triose phosphate transporter
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 374

 Score = 24.6 bits (51), Expect = 8.3
 Identities = 7/19 (36%), Positives = 15/19 (78%)
 Frame = -3

Query: 114 PKALSQPNRPQHXVRKILI 58
           P + ++P+RPQH + +++I
Sbjct: 34  PVSQNEPDRPQHWITRVVI 52


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,486,158
Number of Sequences: 5004
Number of extensions: 22814
Number of successful extensions: 59
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 59
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 194131776
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)