Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_pT_L23
         (494 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_06_0214 + 21616019-21616086,21616205-21616252,21616336-216164...    31   0.51 
10_01_0176 - 1978073-1978324,1978425-1978604                           28   3.6  
03_05_0845 - 28155065-28155374,28156201-28156342,28156375-281565...    28   4.7  
01_06_0639 + 30772804-30772904,30773386-30775675                       27   6.3  
12_02_0996 - 25115643-25115708,25115869-25116107,25116484-251165...    27   8.3  

>09_06_0214 +
           21616019-21616086,21616205-21616252,21616336-21616427,
           21616555-21616645,21617660-21617720,21617810-21617887,
           21617979-21618029,21618118-21618191,21618306-21618378,
           21618762-21618819,21618899-21618969,21619045-21619110,
           21619327-21619359,21619445-21619497,21619572-21619647,
           21619729-21619785,21619874-21619957,21620037-21620135,
           21620260-21620364,21620575-21620643,21621019-21621108
          Length = 498

 Score = 31.1 bits (67), Expect = 0.51
 Identities = 18/47 (38%), Positives = 24/47 (51%)
 Frame = +2

Query: 101 LKALGM*GAEGWNPPSISDVGHXVSNSVRADVRKFSADLKSFVFSAN 241
           L + G  G +GW PP   DV   ++NS + D     A  K +VF AN
Sbjct: 177 LPSKGKTGKDGWYPPGHGDVFPSLNNSGKLDT--LLAQGKEYVFVAN 221


>10_01_0176 - 1978073-1978324,1978425-1978604
          Length = 143

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
 Frame = -2

Query: 244 NIGTENEALEVRGEF-AYIGPDGVTYXVTYVANRGWIPAFGTSHSQG 107
           N+G      EV GE+ +Y G + +   +T+V NRG    FG   + G
Sbjct: 62  NLGPSEFVTEVHGEYGSYYGHNSIA-NLTFVTNRGRHGPFGIVDTSG 107


>03_05_0845 -
           28155065-28155374,28156201-28156342,28156375-28156505,
           28156591-28156784,28156859-28156969,28157234-28157399,
           28157501-28157668,28157766-28158787
          Length = 747

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = -2

Query: 214 VRGEFAYIGPDGVTYXVTYVANR 146
           + G+  ++GPDG TY   + A+R
Sbjct: 96  IEGQGVFVGPDGATYRGAWAADR 118


>01_06_0639 + 30772804-30772904,30773386-30775675
          Length = 796

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 18/56 (32%), Positives = 28/56 (50%)
 Frame = -2

Query: 337 RQDNDNIGVEGYNTGYETSNGIKAQETGQLKNIGTENEALEVRGEFAYIGPDGVTY 170
           R+  +N GV GY TG+   +G     +G   N     +A + R ++ Y GP G +Y
Sbjct: 221 RRQGNNSGVSGYGTGHH-YHGSDTYRSGY--NTQNNQQAYDSR-QYGY-GPSGQSY 271


>12_02_0996 -
           25115643-25115708,25115869-25116107,25116484-25116577,
           25116726-25116864,25116960-25117081,25117261-25117491,
           25117583-25117644,25118335-25118461,25118890-25119183,
           25119266-25119622
          Length = 576

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +2

Query: 14  SIAWHSNNKRKLFK*MSIFRTXCWGLF 94
           S++W +NN +KLF  +   R  CW  F
Sbjct: 319 SLSWMANNTQKLFP-LQTGRPECWTFF 344


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,499,287
Number of Sequences: 37544
Number of extensions: 149067
Number of successful extensions: 369
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 367
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 369
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1035514020
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)