Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_pT_L21
         (673 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16C6.01c ||SPBC543.11c|lysine methyltransferase |Schizosacch...    27   3.3  
SPAC1B3.18c |mrps18||mitochondrial ribosomal protein subunit S18...    25   9.9  
SPCC31H12.02c |mug73||membrane transporter |Schizosaccharomyces ...    25   9.9  

>SPBC16C6.01c ||SPBC543.11c|lysine methyltransferase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 473

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = +1

Query: 457 VYV*VFYCPYKVKSQLIHIIADPLTKLFXYXXXIFL 564
           +Y+ +F+C YK+K Q   +    LTK F     +F+
Sbjct: 344 LYLYLFFCIYKIKFQKCDMNIVMLTKYFNEIWAVFI 379


>SPAC1B3.18c |mrps18||mitochondrial ribosomal protein subunit
           S18|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 223

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = -2

Query: 534 FSQRVCDNVYKLRLNFVWTIKYLHINQTSVQL 439
           FS  +   VYK  L+ ++ IKYL +N T V L
Sbjct: 24  FSSLILFLVYKSVLSKLFFIKYLMLNLTKVGL 55


>SPCC31H12.02c |mug73||membrane transporter |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 306

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 8/13 (61%), Positives = 11/13 (84%)
 Frame = -2

Query: 498 RLNFVWTIKYLHI 460
           RL F+W+I YLH+
Sbjct: 187 RLGFLWSIVYLHV 199


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,465,793
Number of Sequences: 5004
Number of extensions: 48360
Number of successful extensions: 85
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 85
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 85
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 307866294
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)