Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_pT_L21
         (673 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68118-7|CAA92184.2|  573|Caenorhabditis elegans Hypothetical pr...    29   2.3  
AF187013-1|AAG35183.1|  573|Caenorhabditis elegans nicotinic ace...    29   2.3  
Z82286-6|CAB05304.1|  376|Caenorhabditis elegans Hypothetical pr...    27   9.2  
AF240777-1|AAF63745.1|  376|Caenorhabditis elegans delta 12 fatt...    27   9.2  

>Z68118-7|CAA92184.2|  573|Caenorhabditis elegans Hypothetical
           protein R01E6.4 protein.
          Length = 573

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 17/42 (40%), Positives = 23/42 (54%)
 Frame = +3

Query: 42  LILECHTIXIITTFVMLFDYIVSVSILFKVTY*RTSSVFFTI 167
           LIL C  I I+TTFV    Y+    I F ++   T +VFF +
Sbjct: 271 LILPCFLISILTTFVF---YLSDHKITFSISILVTLTVFFLV 309


>AF187013-1|AAG35183.1|  573|Caenorhabditis elegans nicotinic
           acetylcholine receptor-like subunit ACR-12 protein.
          Length = 573

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 17/42 (40%), Positives = 23/42 (54%)
 Frame = +3

Query: 42  LILECHTIXIITTFVMLFDYIVSVSILFKVTY*RTSSVFFTI 167
           LIL C  I I+TTFV    Y+    I F ++   T +VFF +
Sbjct: 271 LILPCFLISILTTFVF---YLSDHKITFSISILVTLTVFFLV 309


>Z82286-6|CAB05304.1|  376|Caenorhabditis elegans Hypothetical
           protein W02A2.1 protein.
          Length = 376

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -2

Query: 507 YKLRLNFVWTIKYLHINQT 451
           YK  +N+ W  KYLH N T
Sbjct: 331 YKREVNYNWFFKYLHYNVT 349


>AF240777-1|AAF63745.1|  376|Caenorhabditis elegans delta 12 fatty
           acid desaturaseFAT-2 protein.
          Length = 376

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -2

Query: 507 YKLRLNFVWTIKYLHINQT 451
           YK  +N+ W  KYLH N T
Sbjct: 331 YKREVNYNWFFKYLHYNVT 349


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,287,856
Number of Sequences: 27780
Number of extensions: 261043
Number of successful extensions: 523
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 510
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 523
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1518563232
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)