Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_pT_L20
         (687 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_03_0049 + 11889214-11890302                                         29   4.6  
09_03_0048 + 11880848-11880952,11881030-11881312,11882667-118827...    28   8.0  

>09_03_0049 + 11889214-11890302
          Length = 362

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 15/33 (45%), Positives = 17/33 (51%)
 Frame = -3

Query: 682 PGRALRREHAAXVRADLCSGLSAAALQPDDPPR 584
           P  AL R+H A   A    G +AA L P  PPR
Sbjct: 26  PQHALHRQHIASSSASSGGGGAAAPLPPRAPPR 58


>09_03_0048 +
           11880848-11880952,11881030-11881312,11882667-11882770,
           11883998-11884416,11884698-11884998,11885136-11885232,
           11885719-11885864,11885975-11886103
          Length = 527

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 18/64 (28%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
 Frame = -1

Query: 270 LTRHGDIVAVWSEKELKLALSCIIIGGKKRHNVSYVTLVPYEYVSCTR*I-NIGRSHYGF 94
           L R+ D +A + EK+ K+A+    +  + RH       VP    S  + I ++     GF
Sbjct: 370 LGRYKDALAKYFEKQGKIAIYFEWVSQQSRHANLQAVPVPLSKASSVKKIFHLAAQRLGF 429

Query: 93  EFKI 82
           EF +
Sbjct: 430 EFSV 433


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,983,534
Number of Sequences: 37544
Number of extensions: 328698
Number of successful extensions: 696
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 687
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 696
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1744894544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)