Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_pT_L20
         (687 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY395750-1|AAR89513.1| 1199|Drosophila melanogaster ATM protein ...    29   7.9  
AY113192-1|AAM29197.1|  574|Drosophila melanogaster AT01448p pro...    29   7.9  
AE014297-1966|ABI31168.1| 2767|Drosophila melanogaster CG6535-PB...    29   7.9  
AE013599-1127|AAO41426.1|  970|Drosophila melanogaster CG12052-P...    29   7.9  
AB107342-1|BAC67647.1|  970|Drosophila melanogaster Lola protein...    29   7.9  
AB107322-1|BAC67627.1|  970|Drosophila melanogaster Lola protein...    29   7.9  
AB107302-1|BAC67607.1|  970|Drosophila melanogaster Lola protein...    29   7.9  
AB107282-1|BAC67587.1|  970|Drosophila melanogaster Lola protein...    29   7.9  

>AY395750-1|AAR89513.1| 1199|Drosophila melanogaster ATM protein
            protein.
          Length = 1199

 Score = 28.7 bits (61), Expect = 7.9
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = -1

Query: 546  RMKCEFRDPFGSCGSESEFVKICDSILSIL 457
            R+  +F  P G CG++  F K C++ + IL
Sbjct: 1075 RLTRDFVAPMGICGTKGVFAKSCEATMHIL 1104


>AY113192-1|AAM29197.1|  574|Drosophila melanogaster AT01448p
           protein.
          Length = 574

 Score = 28.7 bits (61), Expect = 7.9
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = -1

Query: 546 RMKCEFRDPFGSCGSESEFVKICDSILSIL 457
           R+  +F  P G CG++  F K C++ + IL
Sbjct: 450 RLTRDFVAPMGICGTKGVFAKSCEATMHIL 479


>AE014297-1966|ABI31168.1| 2767|Drosophila melanogaster CG6535-PB
            protein.
          Length = 2767

 Score = 28.7 bits (61), Expect = 7.9
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = -1

Query: 546  RMKCEFRDPFGSCGSESEFVKICDSILSIL 457
            R+  +F  P G CG++  F K C++ + IL
Sbjct: 2643 RLTRDFVAPMGICGTKGVFAKSCEATMHIL 2672


>AE013599-1127|AAO41426.1|  970|Drosophila melanogaster CG12052-PI,
           isoform I protein.
          Length = 970

 Score = 28.7 bits (61), Expect = 7.9
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = -1

Query: 360 LCNVRKSYGA*VLLSSKHGHFSFELTPPHHLTRH 259
           L N++K   A   +++ H H S  +  PHH+ +H
Sbjct: 570 LINIKKIIPATTTIATHHPHTSSTIIHPHHIIQH 603


>AB107342-1|BAC67647.1|  970|Drosophila melanogaster Lola protein
           isoform K protein.
          Length = 970

 Score = 28.7 bits (61), Expect = 7.9
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = -1

Query: 360 LCNVRKSYGA*VLLSSKHGHFSFELTPPHHLTRH 259
           L N++K   A   +++ H H S  +  PHH+ +H
Sbjct: 570 LINIKKIIPATTTIATHHPHTSSTIIHPHHIIQH 603


>AB107322-1|BAC67627.1|  970|Drosophila melanogaster Lola protein
           isoform K protein.
          Length = 970

 Score = 28.7 bits (61), Expect = 7.9
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = -1

Query: 360 LCNVRKSYGA*VLLSSKHGHFSFELTPPHHLTRH 259
           L N++K   A   +++ H H S  +  PHH+ +H
Sbjct: 570 LINIKKIIPATTTIATHHPHTSSTIIHPHHIIQH 603


>AB107302-1|BAC67607.1|  970|Drosophila melanogaster Lola protein
           isoform K protein.
          Length = 970

 Score = 28.7 bits (61), Expect = 7.9
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = -1

Query: 360 LCNVRKSYGA*VLLSSKHGHFSFELTPPHHLTRH 259
           L N++K   A   +++ H H S  +  PHH+ +H
Sbjct: 570 LINIKKIIPATTTIATHHPHTSSTIIHPHHIIQH 603


>AB107282-1|BAC67587.1|  970|Drosophila melanogaster Lola protein
           isoform K protein.
          Length = 970

 Score = 28.7 bits (61), Expect = 7.9
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = -1

Query: 360 LCNVRKSYGA*VLLSSKHGHFSFELTPPHHLTRH 259
           L N++K   A   +++ H H S  +  PHH+ +H
Sbjct: 570 LINIKKIIPATTTIATHHPHTSSTIIHPHHIIQH 603


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 28,809,963
Number of Sequences: 53049
Number of extensions: 582502
Number of successful extensions: 1360
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1335
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1360
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 3013199100
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)