Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_pT_L20
         (687 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U39740-3|AAA80426.2|  542|Caenorhabditis elegans C.elegans homeo...    31   1.0  
U16367-1|AAA52203.1|  542|Caenorhabditis elegans CEH-18 protein.       31   1.0  
U39740-4|AAO91692.1|  417|Caenorhabditis elegans C.elegans homeo...    27   9.5  
U39740-2|AAM69077.1|  540|Caenorhabditis elegans C.elegans homeo...    27   9.5  
U29382-5|AAG00003.2|  353|Caenorhabditis elegans Hypothetical pr...    27   9.5  

>U39740-3|AAA80426.2|  542|Caenorhabditis elegans C.elegans homeobox
           protein 18,isoform a protein.
          Length = 542

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +2

Query: 494 SDSLPHDPNGSRNSHFIRSNYVTLKS*WDPT 586
           +D L  + NGS NSHF++  +   K   DPT
Sbjct: 138 ADMLQGNHNGSLNSHFLQQQFAAFKETVDPT 168


>U16367-1|AAA52203.1|  542|Caenorhabditis elegans CEH-18 protein.
          Length = 542

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +2

Query: 494 SDSLPHDPNGSRNSHFIRSNYVTLKS*WDPT 586
           +D L  + NGS NSHF++  +   K   DPT
Sbjct: 138 ADMLQGNHNGSLNSHFLQQQFAAFKETVDPT 168


>U39740-4|AAO91692.1|  417|Caenorhabditis elegans C.elegans homeobox
           protein 18,isoform c protein.
          Length = 417

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +2

Query: 494 SDSLPHDPNGSRNSHFIRSNYVTLKS*WDPT 586
           +D L  + NGS NSHF++  +   K   DPT
Sbjct: 138 ADMLQGNHNGSLNSHFLQQQFAAFKV--DPT 166


>U39740-2|AAM69077.1|  540|Caenorhabditis elegans C.elegans homeobox
           protein 18,isoform b protein.
          Length = 540

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +2

Query: 494 SDSLPHDPNGSRNSHFIRSNYVTLKS*WDPT 586
           +D L  + NGS NSHF++  +   K   DPT
Sbjct: 138 ADMLQGNHNGSLNSHFLQQQFAAFKV--DPT 166


>U29382-5|AAG00003.2|  353|Caenorhabditis elegans Hypothetical
           protein R03H10.7 protein.
          Length = 353

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -1

Query: 240 WSEKELKLALSCIIIGGK 187
           W  KELKL   C ++GGK
Sbjct: 57  WCNKELKLKQFCYVLGGK 74


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,940,255
Number of Sequences: 27780
Number of extensions: 304846
Number of successful extensions: 684
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 668
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 684
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1571291122
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)