Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P17_pT_L20
(687 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AB207270-1|BAE72137.1| 429|Apis mellifera broad-complex protein. 25 0.89
AY350618-1|AAQ57660.1| 425|Apis mellifera complementary sex det... 23 3.6
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 22 6.3
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 22 6.3
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 22 6.3
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 22 6.3
AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic ac... 22 6.3
AF084556-1|AAC71015.1| 652|Apis mellifera pipsqueak protein. 22 6.3
M29488-1|AAA27723.1| 86|Apis mellifera protein ( Bee homeobox-... 21 8.3
AB204559-1|BAD89804.1| 832|Apis mellifera soluble guanylyl cycl... 21 8.3
>AB207270-1|BAE72137.1| 429|Apis mellifera broad-complex protein.
Length = 429
Score = 24.6 bits (51), Expect = 0.89
Identities = 12/33 (36%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Frame = +2
Query: 443 NNEATKIDRILSQIFTNSDSLPHD-PNGSRNSH 538
++E K R+LS N+D+ P D G +N+H
Sbjct: 187 HDETAKKPRVLSPPLNNNDATPTDFSMGVKNNH 219
>AY350618-1|AAQ57660.1| 425|Apis mellifera complementary sex
determiner protein.
Length = 425
Score = 22.6 bits (46), Expect = 3.6
Identities = 13/37 (35%), Positives = 17/37 (45%)
Frame = +1
Query: 382 KIINFTK*NYEQNNTIEYNVQ*RSD*NRQNTITNFYK 492
KII+ NY+ +N YN + N N N YK
Sbjct: 313 KIISSLSNNYKYSNYNNYNNNYNNYNNYNNNYNNNYK 349
Score = 21.4 bits (43), Expect = 8.3
Identities = 9/21 (42%), Positives = 10/21 (47%)
Frame = +1
Query: 376 NYKIINFTK*NYEQNNTIEYN 438
NYK N+ N NN YN
Sbjct: 321 NYKYSNYNNYNNNYNNYNNYN 341
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 21.8 bits (44), Expect = 6.3
Identities = 9/28 (32%), Positives = 14/28 (50%)
Frame = +2
Query: 140 TYSYGTNVT*DTLCRFLPPMIIQDSASL 223
TY VT D C ++PP I + + +
Sbjct: 86 TYQTSVVVTHDGSCLYVPPGIFKSTCKM 113
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 21.8 bits (44), Expect = 6.3
Identities = 9/28 (32%), Positives = 14/28 (50%)
Frame = +2
Query: 140 TYSYGTNVT*DTLCRFLPPMIIQDSASL 223
TY VT D C ++PP I + + +
Sbjct: 86 TYQTSVVVTHDGSCLYVPPGIFKSTCKI 113
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 21.8 bits (44), Expect = 6.3
Identities = 9/28 (32%), Positives = 14/28 (50%)
Frame = +2
Query: 140 TYSYGTNVT*DTLCRFLPPMIIQDSASL 223
TY VT D C ++PP I + + +
Sbjct: 86 TYQTSVVVTHDGSCLYVPPGIFKSTCKI 113
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 21.8 bits (44), Expect = 6.3
Identities = 9/28 (32%), Positives = 14/28 (50%)
Frame = +2
Query: 140 TYSYGTNVT*DTLCRFLPPMIIQDSASL 223
TY VT D C ++PP I + + +
Sbjct: 86 TYQTSVVVTHDGSCLYVPPGIFKSTCKM 113
>AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha7-1 protein.
Length = 555
Score = 21.8 bits (44), Expect = 6.3
Identities = 7/13 (53%), Positives = 7/13 (53%)
Frame = -1
Query: 309 HGHFSFELTPPHH 271
HGH TP HH
Sbjct: 421 HGHSHIHATPHHH 433
>AF084556-1|AAC71015.1| 652|Apis mellifera pipsqueak protein.
Length = 652
Score = 21.8 bits (44), Expect = 6.3
Identities = 8/42 (19%), Positives = 21/42 (50%)
Frame = +3
Query: 420 QYNRIQCSITKRLKSTEYYHKFLQIQIHSHTTQTDRETHISF 545
+Y R + + R + +Y ++ + + + + +ETHI +
Sbjct: 158 RYKRPRTTFEPRATDSRHYDRYKEEESNENYNWEHKETHIDW 199
>M29488-1|AAA27723.1| 86|Apis mellifera protein ( Bee
homeobox-containing gene,partial cds, clone H55. ).
Length = 86
Score = 21.4 bits (43), Expect = 8.3
Identities = 8/30 (26%), Positives = 18/30 (60%)
Frame = -1
Query: 237 SEKELKLALSCIIIGGKKRHNVSYVTLVPY 148
+E+++K+ + KK H ++ + +VPY
Sbjct: 48 TERQIKIWFQNRRMKWKKEHKMASMNIVPY 77
>AB204559-1|BAD89804.1| 832|Apis mellifera soluble guanylyl cyclase
beta-3 protein.
Length = 832
Score = 21.4 bits (43), Expect = 8.3
Identities = 12/37 (32%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Frame = -1
Query: 537 CEFRDPFGSCGSES-EFVKICDSILSILVASLLNIVF 430
CE D S+ F +IC I + V S+LN ++
Sbjct: 417 CEMFDSVSILFSDVVTFTEICSRITPMEVVSMLNAMY 453
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 185,672
Number of Sequences: 438
Number of extensions: 4263
Number of successful extensions: 18
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20952180
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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