Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_pT_L19
         (699 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1861.08c |||U2 snRNP-associated protein Lea1 |Schizosaccharo...    79   5e-16
SPAC5H10.03 |||phosphoglycerate mutase family|Schizosaccharomyce...    33   0.052
SPAC144.13c |srw1|ste9|CDK inhibitor Srw1|Schizosaccharomyces po...    27   2.6  
SPBC15C4.02 |||ABC1 kinase family protein|Schizosaccharomyces po...    26   6.0  
SPBC1604.07 |atp4||F0-ATPase subunit|Schizosaccharomyces pombe|c...    25   7.9  

>SPBC1861.08c |||U2 snRNP-associated protein Lea1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 239

 Score = 79.4 bits (187), Expect = 5e-16
 Identities = 48/122 (39%), Positives = 68/122 (55%), Gaps = 10/122 (8%)
 Frame = -1

Query: 696 LSLMHNPVANXNHYRAYVAFKMPELRLLDFRKIKXKERDEANALF-KSRKGKEIQREI-A 523
           LS + NPVA   +YR Y+ +++P L +LDF +++  ER  A  +F + +   EI   I  
Sbjct: 117 LSCIDNPVAQKQYYRLYLIWRIPSLHILDFERVRRNERLRAEEVFGQIQNPTEIASSIMG 176

Query: 522 KKAKTFV--------PGGNMPDPKVTNLTPQEIHKIREAIKNASSLQEVERLTRMLQSGQ 367
            K++ F         P  N P      LTP+E  KI+EAIKNASS+ E+ RL  ML  G+
Sbjct: 177 VKSRVFDLAALVQSHPEANSPITTGYTLTPEEREKIKEAIKNASSIAEINRLEAMLLEGK 236

Query: 366 IP 361
           IP
Sbjct: 237 IP 238


>SPAC5H10.03 |||phosphoglycerate mutase family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 219

 Score = 32.7 bits (71), Expect = 0.052
 Identities = 13/36 (36%), Positives = 22/36 (61%)
 Frame = -1

Query: 468 NLTPQEIHKIREAIKNASSLQEVERLTRMLQSGQIP 361
           N+ P E H IR+ +  +  +++ E L + L+S QIP
Sbjct: 20  NVGPDEDHNIRDPVLTSEGIEQCEALAKELESKQIP 55


>SPAC144.13c |srw1|ste9|CDK inhibitor Srw1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 556

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 10/33 (30%), Positives = 18/33 (54%)
 Frame = -3

Query: 430 NQECIIPTGGRTSDKNVAVWSDSRAKTFTACDT 332
           +Q  I+ +GG T+D+ + +W+  R       DT
Sbjct: 427 HQRGILASGGGTADRTIKLWNTQRGSMLHNIDT 459


>SPBC15C4.02 |||ABC1 kinase family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 594

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = +3

Query: 270 TTVRLVDPCPFPHLHLVDHLF 332
           T V+L D CP   L  +DHLF
Sbjct: 183 TMVKLQDRCPSTSLKDIDHLF 203


>SPBC1604.07 |atp4||F0-ATPase subunit|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 244

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 12/21 (57%), Positives = 15/21 (71%)
 Frame = -1

Query: 441 IREAIKNASSLQEVERLTRML 379
           IRE I   +SLQEVE +T+ L
Sbjct: 139 IRERIDQVASLQEVESVTQAL 159


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,473,054
Number of Sequences: 5004
Number of extensions: 44631
Number of successful extensions: 128
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 127
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)