Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_pT_L19
         (699 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006661-2|AAK31542.1|  253|Caenorhabditis elegans Spliceosome-a...    85   3e-17
AF040643-5|AAT81201.1|  299|Caenorhabditis elegans Hypothetical ...    30   1.8  
U41019-2|AAA82328.1|  518|Caenorhabditis elegans Hypothetical pr...    29   2.4  
U00050-9|AAA50695.2| 1154|Caenorhabditis elegans Hypothetical pr...    29   2.4  
AC132211-2|AAN01435.1|  254|Caenorhabditis elegans Hypothetical ...    28   7.4  

>AC006661-2|AAK31542.1|  253|Caenorhabditis elegans
           Spliceosome-associated proteinprotein 1 protein.
          Length = 253

 Score = 85.4 bits (202), Expect = 3e-17
 Identities = 41/116 (35%), Positives = 70/116 (60%), Gaps = 4/116 (3%)
 Frame = -1

Query: 696 LSLMHNPVANXNHYRAYVAFKMPELRLLDFRKIKXKERDEANALFKSRKGKEIQREIAKK 517
           ++ + NP+ + ++YR Y+ +K+P +R++DF +++  ER+ A  +FK + GK+ +  I K 
Sbjct: 118 VTFIGNPITHKDNYRMYMIYKLPTVRVIDFNRVRLTEREAAKKMFKGKSGKKARDAIQKS 177

Query: 516 AKTFVPGGNMPDPKVT----NLTPQEIHKIREAIKNASSLQEVERLTRMLQSGQIP 361
             T  P    P+   +     LT ++  KI+EAIKNA SL EV  L  +L SG++P
Sbjct: 178 VHTEDPSEIEPNENSSGGGARLTDEDREKIKEAIKNAKSLSEVNYLQSILASGKVP 233


>AF040643-5|AAT81201.1|  299|Caenorhabditis elegans Hypothetical
           protein F14D2.15 protein.
          Length = 299

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 10/37 (27%), Positives = 21/37 (56%)
 Frame = -2

Query: 128 TWLRRQXRHKASKEQXQYSXKTWRKLIKDMHALSINV 18
           TWL ++  H  S+E+  +  K W ++ +D   L +++
Sbjct: 17  TWLMKKTEHYTSEEEDHFGIKWWLRVTRDDQFLYVDL 53


>U41019-2|AAA82328.1|  518|Caenorhabditis elegans Hypothetical
           protein C04E7.3 protein.
          Length = 518

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 14/57 (24%), Positives = 30/57 (52%)
 Frame = -1

Query: 606 RKIKXKERDEANALFKSRKGKEIQREIAKKAKTFVPGGNMPDPKVTNLTPQEIHKIR 436
           +K+   ER+E + L  +R  K    ++  + K+ V    + + ++ N   QE+H+I+
Sbjct: 341 KKMMSMERNEVDFLRNARYSKHGNLKVWNQFKSLVKANKLLEEEIINQKCQELHEIK 397


>U00050-9|AAA50695.2| 1154|Caenorhabditis elegans Hypothetical
           protein F09F7.3 protein.
          Length = 1154

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = -1

Query: 519 KAKTFVPGGNMPDPKVTNLTPQEIHKIREAIKNA 418
           KA+ F P G++P   V+ LTP + H+  + + N+
Sbjct: 295 KARKFTPFGSLPGTSVSVLTPPKEHEAVDFLSNS 328


>AC132211-2|AAN01435.1|  254|Caenorhabditis elegans Hypothetical
           protein Y108F1.4 protein.
          Length = 254

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 9/36 (25%), Positives = 20/36 (55%)
 Frame = -2

Query: 125 WLRRQXRHKASKEQXQYSXKTWRKLIKDMHALSINV 18
           WL ++  H  S+E+  +  K W ++ +D   L +++
Sbjct: 18  WLMKKTEHYTSEEEDHFGIKWWLRVTRDDQFLYVDL 53


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,970,552
Number of Sequences: 27780
Number of extensions: 261563
Number of successful extensions: 682
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 672
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 681
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)