Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_pT_L18
         (496 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A4KWG0 Cluster: Reverse transcriptase; n=3; Ostrinia nu...    86   4e-16
UniRef50_UPI0000E4800E Cluster: PREDICTED: similar to protein F2...    40   0.031
UniRef50_P34321 Cluster: Uncharacterized protein C07A9.10; n=1; ...    35   0.87 
UniRef50_Q4SF52 Cluster: Chromosome undetermined SCAF14608, whol...    32   6.1  
UniRef50_Q86EJ2 Cluster: Clone ZZD307 mRNA sequence; n=1; Schist...    32   6.1  
UniRef50_Q5B1U0 Cluster: Putative uncharacterized protein; n=1; ...    32   6.1  
UniRef50_Q3SXR2 Cluster: Uncharacterized protein C3orf36; n=1; H...    32   8.1  

>UniRef50_A4KWG0 Cluster: Reverse transcriptase; n=3; Ostrinia
           nubilalis|Rep: Reverse transcriptase - Ostrinia
           nubilalis (European corn borer)
          Length = 497

 Score = 86.2 bits (204), Expect = 4e-16
 Identities = 35/51 (68%), Positives = 42/51 (82%)
 Frame = +3

Query: 3   RMGTRSVGRPPTRWTDDLVRTAGSRWMRKAEDRIMWKALGKAYVQQWADKG 155
           R G RSVGRPPTRWTDDLV+ AGS WM+ A+DR +WK+LG+A+VQQW   G
Sbjct: 447 RAGRRSVGRPPTRWTDDLVKVAGSTWMQAAQDRSLWKSLGEAFVQQWTSFG 497


>UniRef50_UPI0000E4800E Cluster: PREDICTED: similar to protein
           F28E10.3 [imported] - Caenorhabditis elegans; n=4;
           Strongylocentrotus purpuratus|Rep: PREDICTED: similar to
           protein F28E10.3 [imported] - Caenorhabditis elegans -
           Strongylocentrotus purpuratus
          Length = 824

 Score = 39.9 bits (89), Expect = 0.031
 Identities = 18/50 (36%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
 Frame = +3

Query: 9   GTRSVGRPPTRWTDDLVRTAG-SRWMRKAEDRIMWKALGKAYVQQWADKG 155
           G R+ GR   RW D+L +  G + W ++A +R +W    +A++ QW D G
Sbjct: 388 GKRNRGRQRKRWRDELQQFWGQTNWHQQALNRGIWNHHAEAFILQWIDNG 437


>UniRef50_P34321 Cluster: Uncharacterized protein C07A9.10; n=1;
           Caenorhabditis elegans|Rep: Uncharacterized protein
           C07A9.10 - Caenorhabditis elegans
          Length = 254

 Score = 35.1 bits (77), Expect = 0.87
 Identities = 18/44 (40%), Positives = 24/44 (54%), Gaps = 9/44 (20%)
 Frame = +3

Query: 15  RSVGRPPTRWTDDLVRTAGSR---------WMRKAEDRIMWKAL 119
           R VG+PP RWTD L +   +R         W  +A+DR  WKA+
Sbjct: 15  RPVGKPPMRWTDSLRKEITTRDMGNNIITPWSTQAKDRKAWKAV 58


>UniRef50_Q4SF52 Cluster: Chromosome undetermined SCAF14608, whole
           genome shotgun sequence; n=2; Coelomata|Rep: Chromosome
           undetermined SCAF14608, whole genome shotgun sequence -
           Tetraodon nigroviridis (Green puffer)
          Length = 1018

 Score = 32.3 bits (70), Expect = 6.1
 Identities = 17/47 (36%), Positives = 21/47 (44%)
 Frame = -3

Query: 143 PLLDIGLPQCLPHNAVLRLPHPTTSRRAH*VVSPPGWRTPHAPCTHP 3
           P   I LP       V   P P +S  +H   +P  W +PH PC HP
Sbjct: 250 PPPSISLPPVFLLLLVFLPPSPVSSSLSH---APLSWTSPHDPCYHP 293


>UniRef50_Q86EJ2 Cluster: Clone ZZD307 mRNA sequence; n=1;
           Schistosoma japonicum|Rep: Clone ZZD307 mRNA sequence -
           Schistosoma japonicum (Blood fluke)
          Length = 252

 Score = 32.3 bits (70), Expect = 6.1
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = -2

Query: 141 TAGHRPSPMPST*CGPPPSASNDFPPCA 58
           ++G  P P P    G P SASN +PPC+
Sbjct: 92  SSGMMPPPPPDYSSGMPSSASNPYPPCS 119


>UniRef50_Q5B1U0 Cluster: Putative uncharacterized protein; n=1;
           Emericella nidulans|Rep: Putative uncharacterized
           protein - Emericella nidulans (Aspergillus nidulans)
          Length = 477

 Score = 32.3 bits (70), Expect = 6.1
 Identities = 15/35 (42%), Positives = 18/35 (51%)
 Frame = -2

Query: 150 YLPTAGHRPSPMPST*CGPPPSASNDFPPCALSRQ 46
           ++  A H P P  ST   PPP  S  + P ALS Q
Sbjct: 111 FIQDAYHPPFPTSSTTSSPPPPLSPSYSPSALSEQ 145


>UniRef50_Q3SXR2 Cluster: Uncharacterized protein C3orf36; n=1; Homo
           sapiens|Rep: Uncharacterized protein C3orf36 - Homo
           sapiens (Human)
          Length = 165

 Score = 31.9 bits (69), Expect = 8.1
 Identities = 15/32 (46%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
 Frame = -2

Query: 144 PTAGHRPSPMPST*CGPPP-SASNDFPPCALS 52
           P       P+PST  GPPP S   + P CALS
Sbjct: 87  PACSQHTPPLPSTPTGPPPCSPGGNHPLCALS 118


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 435,342,584
Number of Sequences: 1657284
Number of extensions: 7781816
Number of successful extensions: 24592
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 22061
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24333
length of database: 575,637,011
effective HSP length: 95
effective length of database: 418,195,031
effective search space used: 28855457139
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)