Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_pT_L18
         (496 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    27   1.2  
SPAC1F8.02c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   3.6  
SPBC119.10 |asn1||asparagine synthetase|Schizosaccharomyces pomb...    26   3.6  
SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces ...    25   8.3  
SPAC10F6.10 |||protein kinase, RIO family |Schizosaccharomyces p...    25   8.3  

>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 27.5 bits (58), Expect = 1.2
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = -2

Query: 144  PTAGHRPSPMPST*CGPPPSASNDFPPCALSRQS 43
            P+AG  P P+P+    P P+ S++ P  +  R S
Sbjct: 1222 PSAGLPPVPVPTAKAPPVPAPSSEAPSVSTPRSS 1255


>SPAC1F8.02c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 226

 Score = 25.8 bits (54), Expect = 3.6
 Identities = 14/32 (43%), Positives = 21/32 (65%)
 Frame = +2

Query: 386 FIQGVNR*YVSRVQAETKINRTYLTFIYLNLT 481
           F++G+N  YVS  + ET ++ T+  F Y NLT
Sbjct: 14  FLKGINSAYVSNEEGET-VDFTFSGF-YANLT 43


>SPBC119.10 |asn1||asparagine synthetase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 557

 Score = 25.8 bits (54), Expect = 3.6
 Identities = 13/41 (31%), Positives = 17/41 (41%)
 Frame = +3

Query: 30  PPTRWTDDLVRTAGSRWMRKAEDRIMWKALGKAYVQQWADK 152
           P   W DD+  T  + W RK  D I  +      V +W  K
Sbjct: 496 PRREWGDDIPTTKEAFWYRKLFDEIFPRQCADT-VMRWVPK 535


>SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 561

 Score = 24.6 bits (51), Expect = 8.3
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +1

Query: 409 VRFSSSSRN*NKQNLPNIHLFKLNKKKT 492
           VR SSSS N +  N+ N+H   +N   T
Sbjct: 507 VRSSSSSHNNHNGNVRNLHSGSMNNYNT 534


>SPAC10F6.10 |||protein kinase, RIO family |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 521

 Score = 24.6 bits (51), Expect = 8.3
 Identities = 12/31 (38%), Positives = 21/31 (67%), Gaps = 2/31 (6%)
 Frame = +2

Query: 269 GRDSNSSDSI--HISTVTLYVSS*KLKSRAE 355
           G +S+  +S+  H+ST++ YV++ KL  R E
Sbjct: 52  GNNSSKINSVNDHVSTLSRYVNNIKLNDRFE 82


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,804,444
Number of Sequences: 5004
Number of extensions: 30767
Number of successful extensions: 80
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 80
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 194131776
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)