Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_pT_L18
         (496 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_04_0468 - 23172561-23174201                                         29   1.6  
10_01_0026 - 351737-353443                                             28   3.6  
07_03_1626 + 28223967-28225294,28225506-28225779,28225939-282262...    28   3.6  
09_04_0032 - 13953323-13955269                                         28   4.7  
03_06_0613 - 35090377-35090478,35090686-35090839,35090925-350910...    28   4.7  
10_08_0814 - 20779400-20779487,20779780-20780030,20780528-207808...    27   6.3  
03_06_0614 - 35099225-35099461,35099545-35099694,35099919-351000...    27   6.3  

>02_04_0468 - 23172561-23174201
          Length = 546

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = +3

Query: 12  TRSVGRPPTRWTDDLVRTAGSRWMR 86
           T ++GR P  W DD       RWMR
Sbjct: 409 TYAIGRDPASWGDDAAAFRPERWMR 433


>10_01_0026 - 351737-353443
          Length = 568

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = -2

Query: 144 PTAGHRPSPMPST*CGPPPSASNDFPPCALSRQSTWLEDAPRS 16
           P++    SP P +   PPP AS + PP +    S+  +  P S
Sbjct: 22  PSSSLSKSPSPPSPSSPPPPASTNAPPKSAGGVSSSTQAQPSS 64


>07_03_1626 +
           28223967-28225294,28225506-28225779,28225939-28226230,
           28226492-28226651,28226809-28226917,28227004-28227099
          Length = 752

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 11/34 (32%), Positives = 16/34 (47%)
 Frame = +3

Query: 21  VGRPPTRWTDDLVRTAGSRWMRKAEDRIMWKALG 122
           VG     WTD+  +T  S+ M   +D + W   G
Sbjct: 719 VGEMEMVWTDEPSKTRSSKTMNSKDDSVRWPEFG 752


>09_04_0032 - 13953323-13955269
          Length = 648

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 14/30 (46%), Positives = 16/30 (53%)
 Frame = -2

Query: 141 TAGHRPSPMPST*CGPPPSASNDFPPCALS 52
           T+   PSP PS    PPP+AS D     LS
Sbjct: 234 TSPPSPSPSPSPPIPPPPAASQDSKSSKLS 263


>03_06_0613 -
           35090377-35090478,35090686-35090839,35090925-35091004,
           35091191-35091340,35091920-35092045,35096500-35096916
          Length = 342

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 13/31 (41%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
 Frame = +1

Query: 64  RREV-VGCGRRRTALCGRHWGRPMSSSGQIK 153
           RR +  GC + + +L G  W +P+ SSG+IK
Sbjct: 292 RRHIRTGCAKGQESLVG--WAKPLLSSGEIK 320


>10_08_0814 -
           20779400-20779487,20779780-20780030,20780528-20780812,
           20781563-20782008,20782095-20782485
          Length = 486

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 15/31 (48%), Positives = 17/31 (54%)
 Frame = -2

Query: 156 SLYLPTAGHRPSPMPST*CGPPPSASNDFPP 64
           SL  P A   PSP   +   PPPSAS+  PP
Sbjct: 34  SLTRPRASSSPSPASPS--PPPPSASHPAPP 62


>03_06_0614 -
           35099225-35099461,35099545-35099694,35099919-35100066,
           35100152-35100231,35100428-35100594,35100692-35100940,
           35101025-35102310,35102423-35102544,35102946-35103272
          Length = 921

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 13/31 (41%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
 Frame = +1

Query: 64  RREV-VGCGRRRTALCGRHWGRPMSSSGQIK 153
           RR +  GC + + +L G  W +P+ SSG+IK
Sbjct: 776 RRPIRTGCSKGQESLVG--WAKPLLSSGEIK 804


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,853,109
Number of Sequences: 37544
Number of extensions: 231349
Number of successful extensions: 903
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 837
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 897
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1035514020
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)