Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_pT_L18
         (496 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC103567-9|AAL35735.1|  204|Caenorhabditis elegans Hypothetical ...    36   0.016
Z29094-8|CAA82337.1|  254|Caenorhabditis elegans Hypothetical pr...    35   0.028
AF054983-1|AAC72298.1| 1066|Caenorhabditis elegans reverse trans...    32   0.20 
AF025462-7|AAB71003.1|  805|Caenorhabditis elegans Hypothetical ...    32   0.20 
U58735-1|AAC48148.1|  891|Caenorhabditis elegans Hypothetical pr...    31   0.35 
AC087794-3|AAG53700.1|  417|Caenorhabditis elegans Hypothetical ...    31   0.35 
Z78415-10|CAB01676.2|  341|Caenorhabditis elegans Hypothetical p...    29   1.9  
U39852-7|AAK39260.1|  240|Caenorhabditis elegans Ground-like (gr...    29   1.9  
U97194-8|AAB52447.3| 1254|Caenorhabditis elegans Prion-like-(q/n...    27   7.5  

>AC103567-9|AAL35735.1|  204|Caenorhabditis elegans Hypothetical
           protein Y51F10.8 protein.
          Length = 204

 Score = 35.9 bits (79), Expect = 0.016
 Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 9/54 (16%)
 Frame = +3

Query: 15  RSVGRPPTRWTDDLVRTAGSR---------WMRKAEDRIMWKALGKAYVQQWAD 149
           R VGRPP RW D L +   +R         W  +A+DR  WKA+ +A  ++  D
Sbjct: 151 RPVGRPPMRWNDSLRKEVTTRDAFGQVKQLWSTQAKDRKAWKAVIRAAGEERID 204


>Z29094-8|CAA82337.1|  254|Caenorhabditis elegans Hypothetical
           protein C07A9.10 protein.
          Length = 254

 Score = 35.1 bits (77), Expect = 0.028
 Identities = 18/44 (40%), Positives = 24/44 (54%), Gaps = 9/44 (20%)
 Frame = +3

Query: 15  RSVGRPPTRWTDDLVRTAGSR---------WMRKAEDRIMWKAL 119
           R VG+PP RWTD L +   +R         W  +A+DR  WKA+
Sbjct: 15  RPVGKPPMRWTDSLRKEITTRDMGNNIITPWSTQAKDRKAWKAV 58


>AF054983-1|AAC72298.1| 1066|Caenorhabditis elegans reverse
            transcriptase protein.
          Length = 1066

 Score = 32.3 bits (70), Expect = 0.20
 Identities = 18/44 (40%), Positives = 22/44 (50%), Gaps = 9/44 (20%)
 Frame = +3

Query: 15   RSVGRPPTRWTDDLVRTAGSR---------WMRKAEDRIMWKAL 119
            R VGRPP RWTD L +   +R         W   A+DR  W A+
Sbjct: 1015 RPVGRPPMRWTDSLRKEITTRDADGEVITPWSTIAKDRKQWLAV 1058


>AF025462-7|AAB71003.1|  805|Caenorhabditis elegans Hypothetical
           protein K10F12.5 protein.
          Length = 805

 Score = 32.3 bits (70), Expect = 0.20
 Identities = 18/44 (40%), Positives = 22/44 (50%), Gaps = 9/44 (20%)
 Frame = +3

Query: 15  RSVGRPPTRWTDDLVRTAGSR---------WMRKAEDRIMWKAL 119
           R VGRPP RWTD L +   +R         W   A+DR  W A+
Sbjct: 754 RPVGRPPMRWTDSLRKEITTRDADGEVITPWSTIAKDRKQWLAV 797


>U58735-1|AAC48148.1|  891|Caenorhabditis elegans Hypothetical
           protein F20B4.7 protein.
          Length = 891

 Score = 31.5 bits (68), Expect = 0.35
 Identities = 18/44 (40%), Positives = 22/44 (50%), Gaps = 9/44 (20%)
 Frame = +3

Query: 15  RSVGRPPTRWTDDLVRTAGSR---------WMRKAEDRIMWKAL 119
           R VGRPP RWTD L +   +R         W   A+DR  W A+
Sbjct: 840 RPVGRPPMRWTDSLRKEITTRDADGEVITPWSTIAKDRKEWLAV 883


>AC087794-3|AAG53700.1|  417|Caenorhabditis elegans Hypothetical
           protein Y32G9A.9 protein.
          Length = 417

 Score = 31.5 bits (68), Expect = 0.35
 Identities = 18/44 (40%), Positives = 22/44 (50%), Gaps = 9/44 (20%)
 Frame = +3

Query: 15  RSVGRPPTRWTDDLVRTAGSR---------WMRKAEDRIMWKAL 119
           R VGRPP RWTD L +   +R         W   A+DR  W A+
Sbjct: 366 RPVGRPPMRWTDSLRKEITTRDADGEVITPWSTIAKDRKEWLAV 409


>Z78415-10|CAB01676.2|  341|Caenorhabditis elegans Hypothetical
           protein C17G1.7 protein.
          Length = 341

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = +2

Query: 77  LDAEGGGPHYVEGIGEGLCPAV 142
           L     GPH ++GIG G  PAV
Sbjct: 215 LSGRPAGPHKIQGIGAGFAPAV 236


>U39852-7|AAK39260.1|  240|Caenorhabditis elegans Ground-like (grd
           related) protein 6 protein.
          Length = 240

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 12/28 (42%), Positives = 13/28 (46%)
 Frame = -2

Query: 147 LPTAGHRPSPMPST*CGPPPSASNDFPP 64
           +P A   P PMP   C PPP     F P
Sbjct: 39  MPCAAPMPMPMPMPVCPPPPPCPAQFCP 66


>U97194-8|AAB52447.3| 1254|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 20
           protein.
          Length = 1254

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 11/42 (26%), Positives = 18/42 (42%)
 Frame = -2

Query: 144 PTAGHRPSPMPST*CGPPPSASNDFPPCALSRQSTWLEDAPR 19
           P  GH     P+   GPP +     PP A+ +   + +  P+
Sbjct: 557 PNPGHPQGFFPTNQAGPPGTPGRPIPPYAMGQPPMYHQAGPQ 598


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,995,282
Number of Sequences: 27780
Number of extensions: 184472
Number of successful extensions: 511
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 466
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 503
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 935344784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)