Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_pT_L17
         (639 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    48   6e-08
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       24   1.4  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    21   7.6  

>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 48.4 bits (110), Expect = 6e-08
 Identities = 44/150 (29%), Positives = 62/150 (41%), Gaps = 1/150 (0%)
 Frame = -3

Query: 520 DIALLFLETPVDSAPNVGVACLPPAR-ERAPAGVRCFATGWGKDKFGKEGRYQVIMKKVD 344
           DIALL  E  +     VG ACLP      + AG      GWG   F   G    I++K  
Sbjct: 257 DIALLKTEKDIKFGDKVGPACLPFQHFLDSFAGSDVTVLGWGHTSF--NGMLSHILQKTT 314

Query: 343 VPVVDRNTCQSQLRRTRLGRFFQLHSTFMCAGGEPDKDTCRGDGGSPLVCPIDYEKNRYV 164
           + ++ +  C           +  +    MCA  +  KD C+ D G P++      K R V
Sbjct: 315 LNMLTQVECYKY--------YGNIMVNAMCAYAK-GKDACQMDSGGPVLWQNPRTK-RLV 364

Query: 163 QYGIVAWGIGCGEDGTPGVYVDVSNLRTWI 74
             GI++WG  CG+   P     V +   WI
Sbjct: 365 NIGIISWGAECGK--YPNGNTKVGSYIDWI 392


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = +3

Query: 201 RGDPPSPRQVSLSGSPP 251
           RG PP+P Q    G PP
Sbjct: 36  RGSPPNPSQGPPPGGPP 52



 Score = 21.4 bits (43), Expect = 7.6
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = +3

Query: 210 PPSPRQVSLSGSPP 251
           PP P   ++SG PP
Sbjct: 418 PPIPNMSNMSGMPP 431


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = -3

Query: 490 VDSAPNVGVACLPPARERAPAG 425
           + SAP+   +  PPA+  A AG
Sbjct: 517 IASAPSSSTSSSPPAKGAAAAG 538


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 139,642
Number of Sequences: 438
Number of extensions: 2975
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19193721
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)