Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_pT_L16
         (655 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_O96185 Cluster: Putative uncharacterized protein PFB046...    36   1.1  
UniRef50_A0CSN3 Cluster: Chromosome undetermined scaffold_26, wh...    33   7.9  

>UniRef50_O96185 Cluster: Putative uncharacterized protein PFB0460c;
           n=1; Plasmodium falciparum 3D7|Rep: Putative
           uncharacterized protein PFB0460c - Plasmodium falciparum
           (isolate 3D7)
          Length = 2573

 Score = 35.5 bits (78), Expect = 1.1
 Identities = 16/41 (39%), Positives = 25/41 (60%)
 Frame = +2

Query: 452 MNEHIKDNLKTFDE*RKSKPYVTYKHQNKNYINNVKKKHYI 574
           MN HIK+N K  ++ +K+K +   ++ N  Y  N+ K HYI
Sbjct: 183 MNLHIKENKKKDEKEKKNKIHNNDENNNMIYYKNIDKTHYI 223


>UniRef50_A0CSN3 Cluster: Chromosome undetermined scaffold_26, whole
           genome shotgun sequence; n=6; Paramecium
           tetraurelia|Rep: Chromosome undetermined scaffold_26,
           whole genome shotgun sequence - Paramecium tetraurelia
          Length = 774

 Score = 32.7 bits (71), Expect = 7.9
 Identities = 14/41 (34%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
 Frame = +2

Query: 440 GNLNMNEHIKDNLKTFDE*R-KSKPYVTYKHQNKNYINNVK 559
           G  N+N  +++ L++++  R KSK   T+  +N NY+N  K
Sbjct: 713 GGTNLNAKLQEELQSYETQRQKSKRLTTFDDENTNYVNEQK 753


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 460,440,068
Number of Sequences: 1657284
Number of extensions: 7685415
Number of successful extensions: 20588
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 19590
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20571
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 49173558301
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)