Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_pT_L16
         (655 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC947.11c |elg1||DNA replication factor C complex subunit Elg1...    26   4.1  
SPAC14C4.05c |mug61||Sad1 interacting factor|Schizosaccharomyces...    26   4.1  
SPCC4F11.04c |||mannosyltransferase complex subunit |Schizosacch...    25   7.2  
SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium tra...    25   9.5  

>SPBC947.11c |elg1||DNA replication factor C complex subunit
           Elg1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 920

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 13/40 (32%), Positives = 19/40 (47%), Gaps = 4/40 (10%)
 Frame = +1

Query: 43  ASRQSFVYDPTLLRQFQ----PSPHNHTMQYRSTCVVTNI 150
           A + + V  PT+   F     P PH   +QY S C + N+
Sbjct: 734 AFQDNLVGFPTISNPFHANAPPEPHELKLQYHSFCFINNL 773


>SPAC14C4.05c |mug61||Sad1 interacting factor|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 844

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 9/26 (34%), Positives = 17/26 (65%)
 Frame = -1

Query: 130 SIDTASYDYGATVGTALARSGRIQNF 53
           S+DTA+YD+ A VG  +  + +  ++
Sbjct: 193 SVDTATYDFSAEVGNIVTPASKFLDY 218


>SPCC4F11.04c |||mannosyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 345

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 12/25 (48%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
 Frame = +3

Query: 102 P*SYDAVSIDLRR-YQYSNDSTFSF 173
           P  YD + + L R Y++SNDS F+F
Sbjct: 251 PAFYDHIRVLLERDYKFSNDSYFTF 275


>SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium
           transporting Cta4 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1211

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +2

Query: 509 PYVTYKHQNKNYINNVKKKHYIS 577
           PY+ Y +QNK Y   V+   YI+
Sbjct: 38  PYIGYVYQNKLYSEEVRYLTYIA 60


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,038,609
Number of Sequences: 5004
Number of extensions: 36305
Number of successful extensions: 85
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 82
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 85
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)