Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_pT_L16
         (655 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0024 + 159839-159923,160395-160442,160884-160895,161347-16...    28   7.5  
11_04_0236 + 15215386-15216197,15216854-15218888,15219131-152200...    27   9.9  
04_03_0362 + 14934236-14934541,14935549-14935647,14935736-149357...    27   9.9  

>07_01_0024 + 159839-159923,160395-160442,160884-160895,161347-161427,
            161530-161675,161918-161965,162054-162203,165647-165706,
            165788-165859,165960-166409,166640-166839,167239-168236,
            168676-168683,169057-169230,169341-169659,169748-169824,
            169897-169966,170040-170111,170204-170418,170540-170665,
            170751-171046,171133-171157,171163-171303,171400-171498,
            171571-171702,171793-171912
          Length = 1407

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
 Frame = +3

Query: 108  SYDAVSIDLRRYQYSNDSTFSF*GIIN--INARCN*FFSNAHPKPSAK 245
            SYDAV ID  +  +   S      +++  IN  C   F+N HP  S +
Sbjct: 1236 SYDAVDIDNSKILFFGQSLMKGGTVLSYVINVFCRVLFNNNHPSNSKR 1283


>11_04_0236 +
           15215386-15216197,15216854-15218888,15219131-15220017,
           15222420-15226194
          Length = 2502

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = -3

Query: 263 DIGISYFRRWLGMSVRKKLIASRIYVDNSSKTES 162
           D+G  Y  + L     KKL+++R+YVD S   ES
Sbjct: 313 DVGDVYNLQPLSHGNSKKLLSTRLYVDESKCLES 346


>04_03_0362 +
           14934236-14934541,14935549-14935647,14935736-14935798,
           14935878-14935940,14937242-14937362,14937472-14937872,
           14937968-14938141,14938252-14938570,14938659-14938735,
           14938808-14938877,14938951-14939007,14939100-14939314,
           14939436-14939561,14939649-14939944,14940032-14940203,
           14940300-14940398,14940471-14940602,14940692-14940792,
           14941391-14941580,14941819-14941842
          Length = 1034

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 19/50 (38%), Positives = 26/50 (52%), Gaps = 4/50 (8%)
 Frame = +3

Query: 108 SYDAVSIDLRRYQYSN-DSTFSF*GIIN---INARCN*FFSNAHPKPSAK 245
           SYDAV ID  R ++S+   +    GI+    IN  C   F+N HP  S +
Sbjct: 796 SYDAVDIDNVRAKFSSFGQSLMKGGIVLSYVINVFCRVLFNNNHPSNSKR 845


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,513,937
Number of Sequences: 37544
Number of extensions: 182996
Number of successful extensions: 372
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 369
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 372
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1632177336
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)