Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_pT_L15
         (625 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z83119-5|CAB05582.3| 1364|Caenorhabditis elegans Hypothetical pr...    30   1.2  

>Z83119-5|CAB05582.3| 1364|Caenorhabditis elegans Hypothetical
           protein R05H10.6 protein.
          Length = 1364

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 20/79 (25%), Positives = 39/79 (49%), Gaps = 5/79 (6%)
 Frame = +3

Query: 12  ISSSKSINAAFPSLSLXSIIXXKRARLVKPERPLGSCRLSIPNEVLCQCLQ-----ISRM 176
           I++  S +   PS+++  +I  +R +    E P+G   + +P E+L          I ++
Sbjct: 507 ITARDSTHPKEPSVTVTRLIVIQREK--SEEEPMGLNLIPLPTEILVPVDSAVGSFIYKV 564

Query: 177 QSSRLKKQLYYMIQPQHFF 233
               +K+ L Y I+P+H F
Sbjct: 565 TVLPMKENLQYSIEPEHLF 583


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,076,374
Number of Sequences: 27780
Number of extensions: 214321
Number of successful extensions: 480
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 464
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 480
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1363963182
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)