Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_pT_L08
         (675 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3E7.01 |fab1|ste12, SPBC6B1.11c|1-phosphatidylinositol-3-pho...    27   2.5  
SPAC19A8.01c |sec73|sec7c, SPAC23H3.01|guanyl-nucleotide exchang...    26   4.3  
SPBC651.10 |nse5||Smc5-6 complex non-SMC subunit Nse5|Schizosacc...    26   4.3  
SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|ch...    25   7.6  
SPBC1683.05 |||thiamine transporter |Schizosaccharomyces pombe|c...    25   10.0 
SPAC2E12.02 |hsf1|hstf, hsf|transcription factor Hsf1|Schizosacc...    25   10.0 

>SPBC3E7.01 |fab1|ste12,
           SPBC6B1.11c|1-phosphatidylinositol-3-phosphate 5-kinase
           Fab1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1932

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 12/50 (24%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
 Frame = +1

Query: 457 DRGPPSYNATDSMINFN*IPQFQKIKSEI*YMLE--NNLYLQSSERKKIK 600
           D GP S +     +NF  +P + K++    +     +++YL + ER +++
Sbjct: 237 DAGPSSVSTDYRPVNFGKVPSYSKLRKNKAFSSAKVSDMYLSADERNRLE 286


>SPAC19A8.01c |sec73|sec7c, SPAC23H3.01|guanyl-nucleotide exchange
           factor Sec73 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1082

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 14/44 (31%), Positives = 24/44 (54%)
 Frame = +3

Query: 171 VSVDDVAMKPQKIENRKYTITFRFSRYKLNIKNIAI*IDNSMNI 302
           V++DD  +  +K +N KY  T   SR +L +      ++N +NI
Sbjct: 507 VNLDDELLLIEKEKNEKYNFT---SRKRLGLSPYTFTLENQLNI 547


>SPBC651.10 |nse5||Smc5-6 complex non-SMC subunit
           Nse5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 388

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 16/34 (47%), Positives = 22/34 (64%), Gaps = 2/34 (5%)
 Frame = +3

Query: 507 LNTSVPKNKI*NLVHVRK--*FISTILREKKDKN 602
           L TS+PKNKI   +H+R    F+ + LRE  D+N
Sbjct: 305 LPTSLPKNKIRQKLHLRAWVSFLGSALRE-SDRN 337


>SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 750

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 15/52 (28%), Positives = 27/52 (51%)
 Frame = +3

Query: 177 VDDVAMKPQKIENRKYTITFRFSRYKLNIKNIAI*IDNSMNIEEKKNTNAVL 332
           +D++ +K  +  N+KY      S    N+K  ++  DN +++E  KN N  L
Sbjct: 596 IDELKLKLNEA-NKKYQ-ELAISFENSNVKTQSVEPDNGLSLEALKNENQTL 645


>SPBC1683.05 |||thiamine transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 559

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 14/55 (25%), Positives = 28/55 (50%), Gaps = 3/55 (5%)
 Frame = -3

Query: 358 YYISFETRDKTAFVFFFSSIFMELSIYIAIFLM-FNLY--RENLNVIVYFRFSIF 203
           Y+I F  + + +F ++F+++ + L     +F    N+Y   E +  I+Y  F  F
Sbjct: 127 YHIPFAVQSRASFGYYFNTLIILLRFIAGLFYYGTNVYTGAECVQTILYAIFKSF 181


>SPAC2E12.02 |hsf1|hstf, hsf|transcription factor
           Hsf1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 609

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = -1

Query: 450 SQTCDLRP*SPGCYQSVVSPQYKTINSNNYHIIFHSKHA 334
           S++ +L+P  P  Y S  +P Y + N+ +    FH  +A
Sbjct: 436 SESTNLQPVQPVDYMSNSNPSYGSYNAEDQLTNFHPGYA 474


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,525,887
Number of Sequences: 5004
Number of extensions: 49860
Number of successful extensions: 125
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 125
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 309878492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)