Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_pT_L08
         (675 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81594-3|CAB76410.2|  441|Caenorhabditis elegans Hypothetical pr...    31   0.99 
AF022983-1|AAB69946.2|  324|Caenorhabditis elegans Serpentine re...    29   3.0  
Z78419-9|CAB01707.1| 1153|Caenorhabditis elegans Hypothetical pr...    28   7.0  
Z73907-3|CAA98126.1| 1153|Caenorhabditis elegans Hypothetical pr...    28   7.0  
AL021566-2|CAA16502.1|  283|Caenorhabditis elegans Hypothetical ...    28   7.0  

>Z81594-3|CAB76410.2|  441|Caenorhabditis elegans Hypothetical
           protein T20F10.5 protein.
          Length = 441

 Score = 30.7 bits (66), Expect = 0.99
 Identities = 15/39 (38%), Positives = 25/39 (64%)
 Frame = -3

Query: 259 FNLYRENLNVIVYFRFSIF*GFIATSSTETLKHLCTLNS 143
           F L   N +     +++IF  F+AT+ST++L+H+  LNS
Sbjct: 53  FTLIAMNSSKFSTQQWNIFSNFLATASTQSLRHVRLLNS 91


>AF022983-1|AAB69946.2|  324|Caenorhabditis elegans Serpentine
           receptor, class ab (class a-like) protein 16 protein.
          Length = 324

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
 Frame = -3

Query: 355 YISFETRDKT-AFVFFFSSIFMELSIYIAIFLMFN 254
           Y  +E R KT  + F F  IFM  +  IAIF  F+
Sbjct: 129 YKKYENRHKTLGYCFIFGQIFMGTTTTIAIFYKFD 163


>Z78419-9|CAB01707.1| 1153|Caenorhabditis elegans Hypothetical protein
            F29D11.2 protein.
          Length = 1153

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 13/52 (25%), Positives = 27/52 (51%)
 Frame = +3

Query: 153  VHKCFKVSVDDVAMKPQKIENRKYTITFRFSRYKLNIKNIAI*IDNSMNIEE 308
            + K   ++ D++   P K + RK     + ++   N+ +  I +DN +N+EE
Sbjct: 1022 IAKILGLNEDEIEEVPSKTDLRKEAAPSKTNKRNANLISTDIAVDNDVNMEE 1073


>Z73907-3|CAA98126.1| 1153|Caenorhabditis elegans Hypothetical protein
            F29D11.2 protein.
          Length = 1153

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 13/52 (25%), Positives = 27/52 (51%)
 Frame = +3

Query: 153  VHKCFKVSVDDVAMKPQKIENRKYTITFRFSRYKLNIKNIAI*IDNSMNIEE 308
            + K   ++ D++   P K + RK     + ++   N+ +  I +DN +N+EE
Sbjct: 1022 IAKILGLNEDEIEEVPSKTDLRKEAAPSKTNKRNANLISTDIAVDNDVNMEE 1073


>AL021566-2|CAA16502.1|  283|Caenorhabditis elegans Hypothetical
           protein F08E10.2 protein.
          Length = 283

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 14/42 (33%), Positives = 25/42 (59%), Gaps = 2/42 (4%)
 Frame = -3

Query: 325 AFVFFFSSIFMELSIYI--AIFLMFNLYRENLNVIVYFRFSI 206
           +F F F+     L+ Y+  +IF+   L ++   V++YFRFS+
Sbjct: 10  SFSFLFTQAVFYLNFYLLHSIFVSKKLAKKPDLVLIYFRFSV 51


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,886,721
Number of Sequences: 27780
Number of extensions: 274321
Number of successful extensions: 624
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 602
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 624
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1529108810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)