Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_pT_L02
         (433 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22E12.14c |sck2||serine/threonine protein kinase Sck2|Schizo...    27   1.2  
SPCC330.07c |||membrane transporter|Schizosaccharomyces pombe|ch...    26   2.8  
SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch...    25   6.6  
SPAC17G8.11c |||mannosyltransferase complex subunit |Schizosacch...    24   8.7  
SPAC1006.03c |||human CCDC131 homolog|Schizosaccharomyces pombe|...    24   8.7  
SPAC1805.14 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    24   8.7  

>SPAC22E12.14c |sck2||serine/threonine protein kinase
           Sck2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 646

 Score = 27.1 bits (57), Expect = 1.2
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = -3

Query: 122 LMKMVTNQEIEQGPGGAVPS 63
           L  + TNQ +E+G GG++PS
Sbjct: 31  LASIQTNQPVEEGEGGSLPS 50


>SPCC330.07c |||membrane transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 500

 Score = 25.8 bits (54), Expect = 2.8
 Identities = 14/57 (24%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
 Frame = +1

Query: 97  SWLVTIFISHKSHGIGNAVWTHPRKFTSNSQGILLLGPRSSAYLPA-QIRSHQIGYI 264
           +W+  I I    +GIG   + + +K+T++    LL+G     +L    I +  +G++
Sbjct: 182 NWIYLILIGRMLNGIGFTTFLYHKKYTTDK---LLVGQNRRTFLATMNILAQTLGFM 235


>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
            homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2609

 Score = 24.6 bits (51), Expect = 6.6
 Identities = 21/67 (31%), Positives = 31/67 (46%), Gaps = 3/67 (4%)
 Frame = +1

Query: 160  HP-RKFTSNSQGILLLGPRSSAYLPAQIRSHQIGYIQICNYPVHYAHF-RSWLA-EPHQV 330
            HP R+   N +  LLLG   S   P    +H    + +C+Y +    F  S+LA +  Q 
Sbjct: 1984 HPERESQFNERYDLLLGLNDSQQQPFHYGTHYSSAMIVCSYLIRLRPFVDSYLALQGGQF 2043

Query: 331  DGKRQLF 351
            D   +LF
Sbjct: 2044 DHADRLF 2050


>SPAC17G8.11c |||mannosyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 356

 Score = 24.2 bits (50), Expect = 8.7
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = +2

Query: 194 FFFLALVLQRTFLLKYGPIRL 256
           FFFL L+L  T  L  GP+ L
Sbjct: 9   FFFLTLILSATVYLFGGPMML 29


>SPAC1006.03c |||human CCDC131 homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 714

 Score = 24.2 bits (50), Expect = 8.7
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = -2

Query: 123 ADEDGYQPRNRARSRRSCTVSNTSFSCRLN 34
           + E+ +  RN+A+S  +   SNTS S + N
Sbjct: 116 SSENSFNNRNKAKSSETSDSSNTSQSFKEN 145


>SPAC1805.14 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 452

 Score = 24.2 bits (50), Expect = 8.7
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = -1

Query: 301 ENVHNGRGNYRFGYSQSDGTVFEQEGTLKNEGQEEEXPG 185
           E+  NG G  +    +SD  + E+E  L NE + E   G
Sbjct: 142 EDDFNGDGCQQMIEIESDEAISEEEEDLSNENKSESQLG 180


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,905,139
Number of Sequences: 5004
Number of extensions: 38395
Number of successful extensions: 97
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 94
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 97
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 154067960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)