Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_pT_L02
         (433 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0368 + 24741755-24741970,24742415-24742811,24742892-247431...    29   1.6  
02_04_0566 - 23912651-23913862                                         27   4.9  

>04_04_0368 +
           24741755-24741970,24742415-24742811,24742892-24743187,
           24743860-24744096
          Length = 381

 Score = 29.1 bits (62), Expect = 1.6
 Identities = 15/62 (24%), Positives = 32/62 (51%)
 Frame = -1

Query: 430 MNSAGRLKTSYEIQSKMKLLLALCLVGIVAASRPPGEAQLTSYENVHNGRGNYRFGYSQS 251
           ++ +GRL  ++++ + +     +  VG    + PP +A L  + ++H+   NY  G + S
Sbjct: 151 VSRSGRLYLAFQLSTDLPQPHLIYAVG-PEGNLPPSDATLPMHRSMHSHAFNYTSGMASS 209

Query: 250 DG 245
            G
Sbjct: 210 SG 211


>02_04_0566 - 23912651-23913862
          Length = 403

 Score = 27.5 bits (58), Expect = 4.9
 Identities = 19/50 (38%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
 Frame = -1

Query: 370 LALCLVGIVAASRPPGEAQLTSYENVHNG-RGNYRFGYSQSDGTVFEQEG 224
           L + LVG   A   PG+A  +S   V +G    Y FG S SD   + +EG
Sbjct: 13  LVVLLVGTCQARPAPGKAASSSSSGVVDGITAIYNFGDSISDTGNYLREG 62


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,048,658
Number of Sequences: 37544
Number of extensions: 280889
Number of successful extensions: 660
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 648
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 660
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 814473264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)