Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_pT_K22
         (665 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC887.09c |||leucine-rich repeat protein Sog2 |Schizosaccharom...    34   0.021
SPAC1805.01c |ppk6|SPAPJ736.02c|serine/threonine protein kinase ...    26   4.2  
SPAC15A10.06 |||CPA1 sodium ion/proton antiporter|Schizosaccharo...    25   9.8  

>SPBC887.09c |||leucine-rich repeat protein Sog2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 886

 Score = 33.9 bits (74), Expect = 0.021
 Identities = 18/60 (30%), Positives = 26/60 (43%), Gaps = 1/60 (1%)
 Frame = -2

Query: 637 TPTKHSHKGSGTSWSSPHSGXKHSYAGHSGSRYSPKDTHGAHSETSYNTI-KYSEELKPR 461
           TP+ HSH  +G   S+P S    +     G+ Y     HG     S N + K+  +  PR
Sbjct: 244 TPSPHSHSPAGHQQSTPKSTLSKTNENSEGTLYDSNVAHGCTHPPSLNQLNKFHLDASPR 303


>SPAC1805.01c |ppk6|SPAPJ736.02c|serine/threonine protein kinase
           Ppk6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 775

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = +3

Query: 342 NKPAYSVWATFNVTHKRFSMSDRFYKRNRSTVTISEI 452
           N+PA+ VW  F+    R S    F +  RS+V + E+
Sbjct: 437 NEPAFGVWLIFDSVDNRAS---DFVRSMRSSVILEEV 470


>SPAC15A10.06 |||CPA1 sodium ion/proton
           antiporter|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 569

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = -3

Query: 147 LLGACFKSLTAMLLDYCYQPRFNCREPL*ILMLIFKQLIY 28
           L+G     +TA+LL Y Y  R+   E   IL++ +    +
Sbjct: 242 LIGVSIGLITALLLKYSYLRRYPSIESCIILLMAYTSYFF 281


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,646,707
Number of Sequences: 5004
Number of extensions: 52729
Number of successful extensions: 113
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 113
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 303841898
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)