Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_pT_K22
         (665 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_01_0152 - 1754113-1754286,1754396-1754551,1755273-1756194,175...    32   0.36 
06_03_1277 + 28918140-28918279,28919552-28919761,28920179-289203...    29   2.5  
02_04_0114 + 19879468-19880671,19882007-19882179,19882265-198826...    29   3.3  
03_05_0105 - 20861130-20861384,20861472-20862262,20862364-208626...    29   4.4  
11_05_0076 - 18861629-18861862,18862421-18862532,18863001-18863146     28   5.8  
10_06_0061 + 10196105-10196156,10198110-10198406,10198753-101998...    28   7.7  
05_05_0299 - 23930657-23932627                                         28   7.7  

>10_01_0152 -
           1754113-1754286,1754396-1754551,1755273-1756194,
           1756364-1756414,1757540-1757946,1758918-1759067,
           1759178-1759333,1760175-1761041
          Length = 960

 Score = 32.3 bits (70), Expect = 0.36
 Identities = 20/58 (34%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
 Frame = +2

Query: 347 TRIFCLGHIQRNSQTIFNVR*ILQKKSFNSNYIGD--LMDTRFQFFAVFNGVVTRLTV 514
           T +  L H+Q +     N+R +   KS   NYIG    M+   Q +  FN +V RLT+
Sbjct: 254 TSLLVLYHVQDSGDFFQNLRSLSAAKSLEFNYIGKELTMENNLQLYPKFNNLV-RLTL 310


>06_03_1277 +
           28918140-28918279,28919552-28919761,28920179-28920374,
           28920459-28920853,28921024-28921119,28921330-28921402,
           28921650-28921935,28923824-28923946,28924123-28924404,
           28924513-28924928
          Length = 738

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 18/62 (29%), Positives = 29/62 (46%)
 Frame = -2

Query: 610 SGTSWSSPHSGXKHSYAGHSGSRYSPKDTHGAHSETSYNTIKYSEELKPRVH*ISDIVTV 431
           SGTS ++PH     +       ++SP     A   TS    K S  L+ + +  S+I+T+
Sbjct: 514 SGTSMAAPHIAGIAALIKQKNPKWSPSAIKSALMTTSNTLDKGSHPLRAQQYSTSEIMTL 573

Query: 430 ER 425
            R
Sbjct: 574 TR 575


>02_04_0114 +
           19879468-19880671,19882007-19882179,19882265-19882605,
           19882698-19882977,19883070-19883267,19883380-19883652
          Length = 822

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 14/29 (48%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
 Frame = -2

Query: 619 HKGSGTSWSSPHSGXKHSYAGH-SGSRYS 536
           H+  G + S P SG KH  AGH S S++S
Sbjct: 76  HRSHGRASSRPRSGGKHLRAGHLSSSQWS 104


>03_05_0105 -
           20861130-20861384,20861472-20862262,20862364-20862618,
           20862713-20862827,20862959-20863011,20863113-20863373,
           20863699-20863749,20863863-20864114,20864504-20864726,
           20865317-20865460
          Length = 799

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 13/40 (32%), Positives = 18/40 (45%)
 Frame = -2

Query: 589 PHSGXKHSYAGHSGSRYSPKDTHGAHSETSYNTIKYSEEL 470
           PH+   HS   HS SR  P   +  H+E     I+   E+
Sbjct: 661 PHTISAHSSCNHSFSREKPSGRYAVHAEDMLTPIESFSEI 700


>11_05_0076 - 18861629-18861862,18862421-18862532,18863001-18863146
          Length = 163

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = -2

Query: 655 RPXYVSTPTKHSHKGSGTSWSSP 587
           RP ++ST  KH+H+    +WS+P
Sbjct: 129 RPNFLSTSKKHNHELQLINWSTP 151


>10_06_0061 +
           10196105-10196156,10198110-10198406,10198753-10199813,
           10199900-10200250
          Length = 586

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 18/67 (26%), Positives = 29/67 (43%), Gaps = 1/67 (1%)
 Frame = -2

Query: 652 PXYVSTPTKHSHKGSG-TSWSSPHSGXKHSYAGHSGSRYSPKDTHGAHSETSYNTIKYSE 476
           P Y     K+S    G T W+ P        +  SG++++   T G  S T Y T+    
Sbjct: 50  PLYSGGVIKNSEFNVGLTDWTVPLGVQATVNSSSSGNKFAEARTDGQPSRTVYQTV---- 105

Query: 475 ELKPRVH 455
           +++P  H
Sbjct: 106 QIQPNTH 112


>05_05_0299 - 23930657-23932627
          Length = 656

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = -2

Query: 550 GSRYSPKDTHGAHSETSYNTIKYSEE 473
           G  ++ + +HG HS + Y+ I Y E+
Sbjct: 159 GPEFAAQASHGGHSSSKYDKIAYDEQ 184


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,312,099
Number of Sequences: 37544
Number of extensions: 309640
Number of successful extensions: 680
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 642
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 680
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1679486824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)