Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_pT_K22
         (665 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81094-7|CAB03153.2|  960|Caenorhabditis elegans Hypothetical pr...    31   0.56 
AL132948-1|CAC51077.1|  735|Caenorhabditis elegans Hypothetical ...    29   2.2  
U00045-5|AAM29685.1|  132|Caenorhabditis elegans Hypothetical pr...    28   6.8  

>Z81094-7|CAB03153.2|  960|Caenorhabditis elegans Hypothetical
           protein F58G11.2 protein.
          Length = 960

 Score = 31.5 bits (68), Expect = 0.56
 Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
 Frame = -2

Query: 619 HKGS-GTSWSSPHSGXKHSYAGHSGSRYSPKDTHGAHSETSYNTIKYSE 476
           H+G+ G S+        HS   H GSRY  +D  G +  ++ N  +YS+
Sbjct: 62  HQGNHGNSYGRREDDRSHSRDNHGGSRYGERDDRGNNGRSADN--RYSQ 108


>AL132948-1|CAC51077.1|  735|Caenorhabditis elegans Hypothetical
           protein Y39B6A.1 protein.
          Length = 735

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 16/45 (35%), Positives = 20/45 (44%), Gaps = 2/45 (4%)
 Frame = -2

Query: 634 PTKHSHKGSGTSWSSPHS--GXKHSYAGHSGSRYSPKDTHGAHSE 506
           P  H H G      + H   G   ++ GH GS +SP   HG H E
Sbjct: 465 PAHHGHHGEHHHAPAHHGHHGEHGTHHGHHGSHHSPAH-HGHHGE 508



 Score = 28.7 bits (61), Expect = 3.9
 Identities = 14/40 (35%), Positives = 17/40 (42%), Gaps = 2/40 (5%)
 Frame = -2

Query: 625 HSHKGS--GTSWSSPHSGXKHSYAGHSGSRYSPKDTHGAH 512
           H H G   GT  S  H G   ++ GH G  +     HG H
Sbjct: 403 HRHHGEHHGTHHSPAHHGEHGTHHGHHGEHHHAPAHHGHH 442



 Score = 28.7 bits (61), Expect = 3.9
 Identities = 18/46 (39%), Positives = 19/46 (41%), Gaps = 3/46 (6%)
 Frame = -2

Query: 634 PTKHSHKGS-GTSWSSPHSGXKHSYA--GHSGSRYSPKDTHGAHSE 506
           P  H H G  GT     H G  HS A  GH G  +     HG H E
Sbjct: 478 PAHHGHHGEHGTHHG--HHGSHHSPAHHGHHGEHHHAPAHHGHHGE 521



 Score = 28.7 bits (61), Expect = 3.9
 Identities = 16/44 (36%), Positives = 20/44 (45%), Gaps = 2/44 (4%)
 Frame = -2

Query: 631 TKHSHKGSGTSWSSPHS--GXKHSYAGHSGSRYSPKDTHGAHSE 506
           T H H G      + H   G   ++ GH GS +SP   HG H E
Sbjct: 524 THHGHHGEHHHAPAHHGHHGEHGTHHGHHGSHHSPAH-HGHHGE 566



 Score = 28.7 bits (61), Expect = 3.9
 Identities = 15/40 (37%), Positives = 18/40 (45%), Gaps = 2/40 (5%)
 Frame = -2

Query: 619 HKGSGTSWSSPHSGXKHSYAGHSGSRYSP--KDTHGAHSE 506
           H   GT  S  H G    +  H G+ +SP     HGAH E
Sbjct: 655 HGHHGTHHSLAHHGHHGGHGTHHGAHHSPAHHGHHGAHHE 694



 Score = 27.9 bits (59), Expect = 6.8
 Identities = 14/36 (38%), Positives = 17/36 (47%)
 Frame = -2

Query: 619 HKGSGTSWSSPHSGXKHSYAGHSGSRYSPKDTHGAH 512
           H G GT   + HS   H   GH G+ +     HGAH
Sbjct: 670 HGGHGTHHGAHHSPAHH---GHHGAHHEHGAHHGAH 702


>U00045-5|AAM29685.1|  132|Caenorhabditis elegans Hypothetical
           protein F28F5.6 protein.
          Length = 132

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 19/66 (28%), Positives = 28/66 (42%)
 Frame = -2

Query: 655 RPXYVSTPTKHSHKGSGTSWSSPHSGXKHSYAGHSGSRYSPKDTHGAHSETSYNTIKYSE 476
           R   V+   KH  +G+    +SP S  +  Y  H G    P  T  A + TS   ++ S 
Sbjct: 65  RSQSVTVERKHVSRGTSDKQNSPSSRRQSHYTIHKGGNNLP--TSLAPTLTSSYRMRSSS 122

Query: 475 ELKPRV 458
             KP +
Sbjct: 123 ATKPTI 128


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,578,065
Number of Sequences: 27780
Number of extensions: 292806
Number of successful extensions: 616
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 574
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 611
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1497472076
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)