Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_pT_K21
         (718 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pomb...    26   6.2  
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||...    25   8.2  
SPAC15A10.03c |rhp54|rad54|Rad54 homolog Rhp54|Schizosaccharomyc...    25   8.2  

>SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 2386

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 13/47 (27%), Positives = 25/47 (53%)
 Frame = -1

Query: 469 LQSVSKTFH*IYVIHFTVYLYSIKQAWGVTINSS*YFTQCIYIKLTN 329
           LQS++  +       F + + +I++A      S+ +F QC Y+K +N
Sbjct: 194 LQSITPNYPTHREDKFDLLIINIEEACTFFFESAHFFAQCSYLKKSN 240


>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 3971

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 15/43 (34%), Positives = 23/43 (53%)
 Frame = +2

Query: 11  LILISSSYHFTSQSQFIIIKNPNHHTXHLFSLXPQSXSINSIV 139
           LI ISS+  F +  + + +K+   HT   F+   QS S  SI+
Sbjct: 17  LIPISSALPFQTFEESLKLKSNISHTGSFFANLSQSYSSTSII 59


>SPAC15A10.03c |rhp54|rad54|Rad54 homolog Rhp54|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 852

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = +2

Query: 347 NALCKILTTVNGNSPGLFYAVQIYRKMYYINSMKG 451
           N L +  + +N  +PGL  + Q +RK Y I  +KG
Sbjct: 444 NDLSEYFSLLNFANPGLLGSRQEFRKNYEIPILKG 478


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,520,391
Number of Sequences: 5004
Number of extensions: 46813
Number of successful extensions: 90
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 89
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 90
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 335201398
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)