Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_pT_K21
         (718 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

S42187-1|AAB22845.1| 1475|Caenorhabditis elegans pTra2A protein.       28   7.7  
M91371-1|AAA28150.1| 1475|Caenorhabditis elegans membrane protei...    28   7.7  
AC006608-2|AAF39756.1| 1147|Caenorhabditis elegans Transformer :...    28   7.7  
AC006608-1|AAF39755.1| 1475|Caenorhabditis elegans Transformer :...    28   7.7  

>S42187-1|AAB22845.1| 1475|Caenorhabditis elegans pTra2A protein.
          Length = 1475

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 10/28 (35%), Positives = 19/28 (67%)
 Frame = -3

Query: 611 FKCETYS*LEVPTKLVKYYIIMTMSDYY 528
           F C T   + + T+L+KY I++T+++ Y
Sbjct: 490 FVCSTDGVIVLDTELIKYIIVLTLANLY 517


>M91371-1|AAA28150.1| 1475|Caenorhabditis elegans membrane protein
           protein.
          Length = 1475

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 10/28 (35%), Positives = 19/28 (67%)
 Frame = -3

Query: 611 FKCETYS*LEVPTKLVKYYIIMTMSDYY 528
           F C T   + + T+L+KY I++T+++ Y
Sbjct: 490 FVCSTDGVIVLDTELIKYIIVLTLANLY 517


>AC006608-2|AAF39756.1| 1147|Caenorhabditis elegans Transformer : xx
           animals transformedinto males protein 2, isoform b
           protein.
          Length = 1147

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 10/28 (35%), Positives = 19/28 (67%)
 Frame = -3

Query: 611 FKCETYS*LEVPTKLVKYYIIMTMSDYY 528
           F C T   + + T+L+KY I++T+++ Y
Sbjct: 490 FVCSTDGVIVLDTELIKYIIVLTLANLY 517


>AC006608-1|AAF39755.1| 1475|Caenorhabditis elegans Transformer : xx
           animals transformedinto males protein 2, isoform a
           protein.
          Length = 1475

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 10/28 (35%), Positives = 19/28 (67%)
 Frame = -3

Query: 611 FKCETYS*LEVPTKLVKYYIIMTMSDYY 528
           F C T   + + T+L+KY I++T+++ Y
Sbjct: 490 FVCSTDGVIVLDTELIKYIIVLTLANLY 517


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,615,943
Number of Sequences: 27780
Number of extensions: 255040
Number of successful extensions: 481
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 472
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 481
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1676746902
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)