Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_pT_K20
         (700 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6F12.13c |fps1||geranyltranstransferase Fps1|Schizosaccharom...   113   2e-26
SPBC36.06c |spo9||farnesyl pyrophosphate synthetase|Schizosaccha...   109   3e-25
SPBPJ4664.01 |dps1|SPBPJ694.01|decaprenyl diphosphate synthase s...    26   4.5  
SPBC15D4.09c |||cystathionine gamma-synthase |Schizosaccharomyce...    26   6.0  
SPAC18G6.07c |mra1||ribosome biogenesis protein Mra1|Schizosacch...    26   6.0  
SPAC869.10c |||proline specific permease |Schizosaccharomyces po...    26   6.0  
SPBC17G9.13c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    25   7.9  
SPBC21C3.15c |||aldehyde dehydrogenase |Schizosaccharomyces pomb...    25   7.9  
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce...    25   7.9  

>SPAC6F12.13c |fps1||geranyltranstransferase
           Fps1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 347

 Score =  113 bits (273), Expect = 2e-26
 Identities = 56/168 (33%), Positives = 95/168 (56%), Gaps = 1/168 (0%)
 Frame = -3

Query: 617 WRTSMGQHLDHVTGNRKT-DYSSFTLDRXXXXXXXXXXXXXYNLPVSLGLLLAENVDEKI 441
           ++T +GQ LD +T    + D S F+L +             + LPV+L + LA     + 
Sbjct: 157 FQTELGQQLDLLTAPEDSVDLSKFSLQKHSFIVIYKTAFYSFYLPVALAMHLAGVATPEN 216

Query: 440 YKSAQDICLEIGTMFQIQDDFIDCFGDEIKTGKVGTDIQERKCTWLAVQALQRCTEAQRT 261
            K AQDI + +G  FQ+QDD++DC+GD   TGK+GTDI + KC+W+   AL +CT  QR 
Sbjct: 217 LKCAQDILIILGKYFQVQDDYLDCYGDPTVTGKIGTDILDNKCSWIINLALAKCTPEQRV 276

Query: 260 VFKACYGSSEPAHVERIKRLYEDLHLPQIYKHQEKAMYDNIIRQIENI 117
           +    YG  +    +R+K ++E+L++   +++ E++    I + I+ +
Sbjct: 277 ILDDNYGRKDSESEKRVKAVFEELNIRGEFENYEESEVSEIKKLIDGV 324


>SPBC36.06c |spo9||farnesyl pyrophosphate
           synthetase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 351

 Score =  109 bits (263), Expect = 3e-25
 Identities = 60/187 (32%), Positives = 97/187 (51%), Gaps = 3/187 (1%)
 Frame = -3

Query: 611 TSMGQHLDHVTG-NRKTDYSSFTLDRXXXXXXXXXXXXXYNLPVSLGLLLAENVDEKIYK 435
           T +GQ  D ++  + +    SF L +             + LP+   LLL+ N ++K Y 
Sbjct: 163 TELGQQEDLLSSRDGEASLRSFDLMKYDFIITYKTSFYSFYLPIKCALLLSRNSNQKAYD 222

Query: 434 SAQDICLEIGTMFQIQDDFIDCFGDEIKTGKVGTDIQERKCTWLAVQALQRCTEAQRTVF 255
           +   +   +G  FQ+QDD++DCFGD    GKVG DIQ+ KCTWL   A +  +  Q  + 
Sbjct: 223 TTIKLSKLLGYYFQVQDDYLDCFGDYTVLGKVGMDIQDNKCTWLVCYAEKFASADQLNLL 282

Query: 254 KACYGSSEPAHVERIKRLYEDLHLPQIYKHQEKAMYDNIIRQIENIPIEAA--RVXFKKL 81
           +A YG +   ++  IK+LY +L +P++Y   E  M D+I ++I+ I       +  F K 
Sbjct: 283 RAHYGKAGSENIAVIKQLYHELQIPELYHKFEDDMVDSISKEIDLIDESTGLKKCIFTKF 342

Query: 80  LEMTXKR 60
            ++  KR
Sbjct: 343 FQLIYKR 349


>SPBPJ4664.01 |dps1|SPBPJ694.01|decaprenyl diphosphate synthase
           subunit Dps1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 378

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 19/73 (26%), Positives = 33/73 (45%), Gaps = 1/73 (1%)
 Frame = -3

Query: 410 IGTMFQIQDDFIDCFGDEIKTGK-VGTDIQERKCTWLAVQALQRCTEAQRTVFKACYGSS 234
           IGT FQ+ DD +D    +   GK  G D++    T   + A ++  E    +       +
Sbjct: 262 IGTAFQLMDDVLDYTSKDDTLGKAAGADLKLGLATAPVLFAWKKYPELGAMIVNR---FN 318

Query: 233 EPAHVERIKRLYE 195
            P+ ++R + L E
Sbjct: 319 HPSDIQRARSLVE 331


>SPBC15D4.09c |||cystathionine gamma-synthase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 610

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 9/31 (29%), Positives = 19/31 (61%)
 Frame = -3

Query: 221 VERIKRLYEDLHLPQIYKHQEKAMYDNIIRQ 129
           ++R ++  E++H+PQ+Y     + Y  I +Q
Sbjct: 130 IDRNRKYTEEIHIPQVYSVLFPSKYFGIAKQ 160


>SPAC18G6.07c |mra1||ribosome biogenesis protein
           Mra1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 359

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = -3

Query: 428 QDICLEIGTMFQIQDDFIDCFGDE 357
           Q +C+ IG M    DDF D + DE
Sbjct: 307 QSVCIAIGAMAHGPDDFSDGWVDE 330


>SPAC869.10c |||proline specific permease |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 552

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 18/64 (28%), Positives = 27/64 (42%)
 Frame = -1

Query: 688 NRKKSPNILXKWLVNWDGVSK*LYGALQWVNI*IM*QEIEKQTILHLLWIVTTLL*NTRP 509
           N   S  ++  W  N   +S    G L W+ + +   +  K  IL+ LW        TRP
Sbjct: 399 NASASAAVVFNWFCNLSTIS----GFLAWICVLVAYLQFRKAMILNNLW-------ETRP 447

Query: 508 HITP 497
           + TP
Sbjct: 448 YKTP 451


>SPBC17G9.13c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 317

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 12/22 (54%), Positives = 16/22 (72%)
 Frame = -1

Query: 460 KMWMKKFINLLKTFAWK*ERCS 395
           K  +K+F NLLKTFA + ER +
Sbjct: 93  KRRIKRFRNLLKTFACRIERAN 114


>SPBC21C3.15c |||aldehyde dehydrogenase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 522

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 17/43 (39%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
 Frame = -2

Query: 666 YFXNGL*TGMVCRNDFMA-HFNGSTFRSCNRKSKNRLFFIYSG 541
           YF + L TGMV  NDF A +     F  C +    R F  Y G
Sbjct: 416 YFTDNLETGMVAVNDFGAFYLLQMPFGGCKKSGYGR-FAGYEG 457


>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1957

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 18/71 (25%), Positives = 33/71 (46%)
 Frame = -3

Query: 227  AHVERIKRLYEDLHLPQIYKHQEKAMYDNIIRQIENIPIEAARVXFKKLLEMTXKRQHEA 48
            A  E I +  EDL      + +++A +DN   ++EN+      + F    E++  R+  A
Sbjct: 1829 AGAEFIVKFKEDLEKCAAEEKEKQATFDNYSEKVENLGKSIEALYFALNREISF-RKSLA 1887

Query: 47   XREEMRHNALM 15
              +   HN L+
Sbjct: 1888 LSKSAYHNLLV 1898


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,830,128
Number of Sequences: 5004
Number of extensions: 57047
Number of successful extensions: 180
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 175
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 180
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)