Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P17_pT_K20
(700 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0411 + 29151647-29151790,29152974-29153039,29153398-291535... 129 2e-30
05_06_0265 - 26759960-26760088,26760315-26760386,26760457-267605... 127 1e-29
04_04_1432 - 33558895-33559023,33559215-33559286,33559405-335594... 112 3e-25
04_04_1431 - 33551127-33551300,33551362-33551433,33551508-335515... 96 2e-20
01_06_0363 - 28745581-28745709,28746043-28746114,28746373-287464... 56 2e-08
07_03_1039 - 23454130-23454552,23454859-23455536 35 0.054
09_04_0692 + 19502878-19502920,19505011-19505104,19505196-195052... 30 2.0
05_05_0127 - 22580720-22580808,22580936-22580987,22581703-225819... 29 3.5
08_02_0370 - 16333471-16333526,16333821-16333912,16334553-163346... 29 4.7
07_03_1258 + 25244863-25245282,25246419-25246568,25246665-252468... 28 8.2
>01_06_0411 +
29151647-29151790,29152974-29153039,29153398-29153538,
29153638-29153724,29153968-29154084,29154177-29154265,
29154510-29154561,29154667-29154762,29154835-29154879,
29155002-29155091,29155164-29155235,29155490-29155618
Length = 375
Score = 129 bits (311), Expect = 2e-30
Identities = 68/189 (35%), Positives = 109/189 (57%), Gaps = 2/189 (1%)
Frame = -3
Query: 617 WRTSMGQHLDHVTGNR-KTDYSSFTLDRXXXXXXXXXXXXXYNLPVSLGLLLA-ENVDEK 444
++T+ GQ LD +T + + D + + L + LPV+ LLL+ EN+D
Sbjct: 188 FKTASGQLLDLITTHEGEKDLTKYNLTVHRRIVQYKTAYYSFYLPVACALLLSGENLDN- 246
Query: 443 IYKSAQDICLEIGTMFQIQDDFIDCFGDEIKTGKVGTDIQERKCTWLAVQALQRCTEAQR 264
+ ++I +E+GT FQ+QDD++DC+GD GK+GTDI++ KC+WL VQAL+R E Q+
Sbjct: 247 -FGDVKNILVEMGTYFQVQDDYLDCYGDPEFIGKIGTDIEDYKCSWLVVQALERADENQK 305
Query: 263 TVFKACYGSSEPAHVERIKRLYEDLHLPQIYKHQEKAMYDNIIRQIENIPIEAARVXFKK 84
+ YG +P V ++K LY++L+L ++ E+ Y+ +I IE P +A + K
Sbjct: 306 HILFENYGKPDPECVAKVKDLYKELNLEAVFHEYERESYNKLIADIEAHPNKAVQNVLKS 365
Query: 83 LLEMTXKRQ 57
L KRQ
Sbjct: 366 FLHKIYKRQ 374
>05_06_0265 -
26759960-26760088,26760315-26760386,26760457-26760546,
26760649-26760693,26760785-26760880,26760980-26761031,
26761209-26761297,26761388-26761504,26761680-26761737,
26761834-26761936,26762027-26762051,26762677-26762826
Length = 341
Score = 127 bits (306), Expect = 1e-29
Identities = 67/188 (35%), Positives = 105/188 (55%), Gaps = 1/188 (0%)
Frame = -3
Query: 617 WRTSMGQHLDHVTGNR-KTDYSSFTLDRXXXXXXXXXXXXXYNLPVSLGLLLAENVDEKI 441
++T+ GQ LD +T + + D + + + + LPV+ LLL+ D
Sbjct: 154 FKTASGQLLDLITTHEGEKDLNKYNIGVHRRIVQYKTSYYSFYLPVACALLLSGE-DLTK 212
Query: 440 YKSAQDICLEIGTMFQIQDDFIDCFGDEIKTGKVGTDIQERKCTWLAVQALQRCTEAQRT 261
Y + +DI +++G FQ+QDD++DC+GD GK+GTDI++ KC+WL VQAL+R E+Q++
Sbjct: 213 YGAVEDILVKMGIYFQVQDDYLDCYGDPKFIGKIGTDIEDYKCSWLVVQALERADESQKS 272
Query: 260 VFKACYGSSEPAHVERIKRLYEDLHLPQIYKHQEKAMYDNIIRQIENIPIEAARVXFKKL 81
V YG +PA V ++K LY +L+L ++ E Y +I IE P A + K
Sbjct: 273 VLFENYGKKDPACVAKVKSLYRELNLEAVFLDYENESYKKLIADIEAQPSIAVQNVLKSF 332
Query: 80 LEMTXKRQ 57
L KRQ
Sbjct: 333 LHKIYKRQ 340
>04_04_1432 -
33558895-33559023,33559215-33559286,33559405-33559494,
33559574-33559618,33559693-33559788,33559905-33559956,
33560044-33560132,33560226-33560342,33560448-33560534,
33560646-33560761,33560854-33560878,33561816-33562121
Length = 407
Score = 112 bits (269), Expect = 3e-25
Identities = 61/187 (32%), Positives = 97/187 (51%), Gaps = 1/187 (0%)
Frame = -3
Query: 614 RTSMGQHLDHVTGNRKT-DYSSFTLDRXXXXXXXXXXXXXYNLPVSLGLLLAENVDEKIY 438
+T+MGQ LD +T + D + + + + LPV+ LLL Y
Sbjct: 221 QTAMGQMLDLITTHTGAKDLARYRIQGYRRIVKYKTSYYSFYLPVACALLL-NGARLSDY 279
Query: 437 KSAQDICLEIGTMFQIQDDFIDCFGDEIKTGKVGTDIQERKCTWLAVQALQRCTEAQRTV 258
+++ +E+G FQIQDD++DCFGD GKVGTDI++ KC+WL VQA++ E + +
Sbjct: 280 VELKNVLIEMGVYFQIQDDYLDCFGDPEVIGKVGTDIEDYKCSWLIVQAMELANENEMKI 339
Query: 257 FKACYGSSEPAHVERIKRLYEDLHLPQIYKHQEKAMYDNIIRQIENIPIEAARVXFKKLL 78
YG S+P V +K +Y +L L I+ E +Y +++ I+ A R K L
Sbjct: 340 LYENYGKSDPKCVAEVKSVYRELDLQDIFLEYESRVYKHLVSTIDAETDRAIRDILKSFL 399
Query: 77 EMTXKRQ 57
+ +R+
Sbjct: 400 KKIYRRK 406
Score = 31.5 bits (68), Expect = 0.67
Identities = 15/39 (38%), Positives = 20/39 (51%)
Frame = -3
Query: 680 KVTEHTLXMACKLGWCVEMTLWRTSMGQHLDHVTGNRKT 564
+V + +AC LGWCVE W + LD +T N T
Sbjct: 131 EVDDEDFYLACVLGWCVE---WLQASALVLDDITDNAYT 166
>04_04_1431 -
33551127-33551300,33551362-33551433,33551508-33551597,
33551671-33551715,33551785-33551880,33552245-33552296,
33552412-33552500,33552590-33552887,33553007-33553109,
33553328-33553352,33553503-33553763
Length = 434
Score = 96.3 bits (229), Expect = 2e-20
Identities = 65/202 (32%), Positives = 98/202 (48%), Gaps = 16/202 (7%)
Frame = -3
Query: 614 RTSMGQHLDHV-TGNRKTDYSSFTLDRXXXXXXXXXXXXXYNLPVSLGLLLAENVDEKIY 438
+TS+GQ LD + T D + ++++ + LPV+ LLL+ E +
Sbjct: 233 QTSLGQMLDLISTHTGADDLAKYSIEGYRRIVKYKTAYYSFYLPVANALLLSGAKLED-F 291
Query: 437 KSAQDICLEIGTMFQIQDDFIDCFGDEIKTGKVGTDIQERKCTWLAVQALQRCTEAQRTV 258
+DI +E+G FQIQDD++DCF D GK+GTDI++ KC+WL VQAL Q V
Sbjct: 292 SGLKDILIEMGIYFQIQDDYLDCFADPNTIGKIGTDIEDHKCSWLIVQALGHADNNQIEV 351
Query: 257 FKACYGSSEPAHVERIKRLYEDLHL--------------PQ-IYKHQEKAMYDNIIRQIE 123
YG + + V +KR Y L L PQ I+ E+ Y++++ IE
Sbjct: 352 LHRNYGKKDSSSVSEVKRTYAALDLKIWAIDLADCEFCPPQDIFSEFERRCYNHLVTSIE 411
Query: 122 NIPIEAARVXFKKLLEMTXKRQ 57
AAR L+ +R+
Sbjct: 412 AQKDHAAREILISFLKKIHQRK 433
>01_06_0363 -
28745581-28745709,28746043-28746114,28746373-28746417,
28746523-28746618,28747029-28747080,28747232-28747305,
28747386-28747502,28747844-28747930,28748186-28748281,
28748508-28748654
Length = 304
Score = 56.4 bits (130), Expect = 2e-08
Identities = 27/74 (36%), Positives = 38/74 (51%)
Frame = -3
Query: 281 CTEAQRTVFKACYGSSEPAHVERIKRLYEDLHLPQIYKHQEKAMYDNIIRQIENIPIEAA 102
C + K YG S+PA V ++K LY +LHL +++ E+ Y+ +I IE P EA
Sbjct: 229 CFGEPEIIGKENYGKSDPACVAKVKDLYNELHLQRVFSEYERESYEKLISAIEAQPNEAV 288
Query: 101 RVXFKKLLEMTXKR 60
R K L KR
Sbjct: 289 RAVLKSFLHKIYKR 302
Score = 45.6 bits (103), Expect = 4e-05
Identities = 31/92 (33%), Positives = 46/92 (50%), Gaps = 1/92 (1%)
Frame = -3
Query: 614 RTSMGQHLDHVTGNRKTDYSSFTLDRXXXXXXXXXXXXXYNLPVSLGLLLA-ENVDEKIY 438
+T+ GQ LD +T N L++ + LPV+ LLL E++D Y
Sbjct: 153 QTTSGQLLDQITTNEGRK----DLNKYRRIVEYKTAYYSFYLPVACALLLFDESLDN--Y 206
Query: 437 KSAQDICLEIGTMFQIQDDFIDCFGDEIKTGK 342
+ I +E+G FQ QDD++DCFG+ GK
Sbjct: 207 AQVKHILVEMGVYFQSQDDYLDCFGEPEIIGK 238
>07_03_1039 - 23454130-23454552,23454859-23455536
Length = 366
Score = 35.1 bits (77), Expect = 0.054
Identities = 22/72 (30%), Positives = 36/72 (50%), Gaps = 1/72 (1%)
Frame = -3
Query: 485 VSLGLLLAENVDEKIYKSAQDICLEIGTMFQIQDDFIDCFGDEIKTGK-VGTDIQERKCT 309
V +G +L DE+I +S + IG +FQ+ DD +D + GK G D+ K T
Sbjct: 260 VVIGAILGGGSDEQI-ESLRMYARSIGLLFQVVDDILDVTKSSEELGKTAGKDLASDKTT 318
Query: 308 WLAVQALQRCTE 273
+ + L++ E
Sbjct: 319 YPKLLGLEKSRE 330
>09_04_0692 +
19502878-19502920,19505011-19505104,19505196-19505227,
19505833-19506074,19506758-19506994,19508283-19508396
Length = 253
Score = 29.9 bits (64), Expect = 2.0
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = +3
Query: 87 FKXXAGGLYWYIFNLSYNIVVH 152
F+ GG+YWY F YN+V+H
Sbjct: 231 FRDFTGGMYWYAF--IYNVVLH 250
>05_05_0127 -
22580720-22580808,22580936-22580987,22581703-22581908,
22582019-22582152,22582239-22582369,22583333-22583392,
22583615-22583755,22583880-22584347,22584524-22584686,
22585373-22585476,22585755-22585853,22586177-22586281,
22586516-22586596,22587168-22587986,22588497-22588553
Length = 902
Score = 29.1 bits (62), Expect = 3.5
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +2
Query: 557 NSLFFDFLLHDLNVDPLKCAIKSFRHTIPV 646
NS D + + + +KC KS+R TIPV
Sbjct: 783 NSCLMDLYVERMRFEAVKCMSKSYRPTIPV 812
>08_02_0370 -
16333471-16333526,16333821-16333912,16334553-16334671,
16335152-16335226,16335328-16335393,16335507-16335563,
16335640-16335689,16335774-16335944,16337057-16337183,
16337658-16338017
Length = 390
Score = 28.7 bits (61), Expect = 4.7
Identities = 16/70 (22%), Positives = 35/70 (50%)
Frame = -3
Query: 479 LGLLLAENVDEKIYKSAQDICLEIGTMFQIQDDFIDCFGDEIKTGKVGTDIQERKCTWLA 300
L +++ E + + +++ + T++Q+ + ID G E+K ++ IQE C L
Sbjct: 215 LPIIVLEMPSVLLMAAIRNVHIARPTIYQVVKEMIDKMGYEVKLVRINKRIQEAYCAELF 274
Query: 299 VQALQRCTEA 270
+ + TE+
Sbjct: 275 LTKVGDHTES 284
>07_03_1258 +
25244863-25245282,25246419-25246568,25246665-25246877,
25246979-25247068,25247311-25247424,25247881-25248150,
25248251-25248407,25248691-25248741,25248742-25248819,
25249357-25249457,25249832-25250002,25250136-25250210,
25251527-25251793
Length = 718
Score = 27.9 bits (59), Expect = 8.2
Identities = 11/19 (57%), Positives = 15/19 (78%)
Frame = +3
Query: 309 STFALLYICTNFTSFYFIT 365
STF L+Y+ +F SF+FIT
Sbjct: 467 STFGLVYLIYSFCSFHFIT 485
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,761,015
Number of Sequences: 37544
Number of extensions: 342369
Number of successful extensions: 715
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 701
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 714
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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